Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttctctcccggcactgaatgccttcttaatattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG

Basic information

species Physcomitrella patens
transcript PP1S28_10V6.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 1
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttct-ctcccggcactgaatgccttcttaa-tattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
         | | |||  |  |  | | |   |  | | |   |||| | |||  |    |  | |   | |||| || |     |  | | | |  | ||| ||||||| |||||     ||||  | ||||| ||||||||||||||||| |||||||| |||||| | || ||| | ||| | ||||| ||||||||
-------gtactctcatagttttgtctcatgtatttgtttttctgttttactcgtgaagatttaggtagttttaactaatagacgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 2
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttct-ctcccggcactgaatgccttcttaa-tattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
          |  ||   |  |  | | |   |  | | |   |||| | |||  |    ||   |     |||| || |     |  | | | |  | ||| ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||||||||
---------gtactcgtagttttgtctcatgtatttgtttttctgttttactcatgaagatgtgggtagctttaactaatagatgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 3'ss of exon 2
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttctctcccggcactgaatgccttcttaatattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
       || | ||   | | | |||||  ||  ||||    || | |||     |   ||  |  ||| | | || |     |  | | | |  | ||| ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||||||||
---gtactcgtagttttgtc-tcatgtatttg--gttttctgttttactcatgaagatgtgggtagctt-taactaatagatgacacatttttcatgcagCAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv09s0054g00190.t01 (Vitis vinifera), 3'ss of exon 1
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttct-ctcccggcactgaatgccttcttaa-tattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
          |  ||   |  |  | | |   |  | | |   |||| | |||  |    ||   |   | |||| || |     |  | | | |  | ||| ||| ||| | ||      ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||||||||
---------gtactcgtagttttgtctcatgtatttgtttttctgttttactcatgaagatgtgggtagttttaactaatagatgacacatttttcatgcagCAAATGGAGCCGACTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGG

upper sequence: PP1S28_10V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 1
attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttct-ctcccggcactgaatgccttcttaa-tattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
          |  |||  |  |  | | |   |  ||| | | |||| | |||  |    ||   |   | |||| || |     |  | | | |  | ||| ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| ||| ||||
---------gtactcatagttttgtctcatgtattttttttcctgttttactcatgaagatgtgggtagttttaactaatagatgagacatttttcatgcagCAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67701992|gb|BJ962225.1|BJ962225
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|7147733|gb|AW509598.1|AW509598
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|19784792|gb|BQ040234.1|BQ040234
EST:     AAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: AAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162213471|gb|FC389148.1|FC389148
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162202534|gb|FC380049.1|FC380049
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162272020|gb|FC448438.1|FC448438
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162261690|gb|FC438123.1|FC438123
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18351768|gb|BJ183820.1|BJ183820
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67720481|gb|BJ970740.1|BJ970740
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67727087|gb|BJ977346.1|BJ977346
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162261689|gb|FC438122.1|FC438122
EST:     CAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18340297|gb|BJ172325.1|BJ172325
EST:     CGTGCTCANCAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162278231|gb|FC454570.1|FC454570
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67701991|gb|BJ962224.1|BJ962224
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|208388632|gb|DC953422.1|DC953422
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67718670|gb|BJ968929.1|BJ968929
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18327583|gb|BJ159586.1|BJ159586
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18347090|gb|BJ179136.1|BJ179136
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAA
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAA
EST: gi|208362232|gb|DC939656.1|DC939656
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAGGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67704547|gb|BJ964780.1|BJ964780
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67719402|gb|BJ969661.1|BJ969661
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67717180|gb|BJ967439.1|BJ967439
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18375138|gb|BJ206716.1|BJ206716
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162202533|gb|FC380048.1|FC380048
EST:     TCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTT
genomic: TCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67725699|gb|BJ975958.1|BJ975958
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162278230|gb|FC454569.1|FC454569
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67572712|gb|BJ945536.1|BJ945536
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67569747|gb|BJ942571.1|BJ942571
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|208382639|gb|DC923239.1|DC923239
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162253343|gb|FC429769.1|FC429769
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18362781|gb|BJ194852.1|BJ194852
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67720482|gb|BJ970741.1|BJ970741
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|208347105|gb|DC909375.1|DC909375
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162263668|gb|FC440126.1|FC440126
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67727691|gb|BJ977950.1|BJ977950
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162272021|gb|FC448439.1|FC448439
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162263669|gb|FC440127.1|FC440127
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162253342|gb|FC429768.1|FC429768
EST:     TCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: TCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|67703202|gb|BJ963435.1|BJ963435
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|208373902|gb|DC940413.1|DC940413
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|162213472|gb|FC389149.1|FC389149
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|18349279|gb|BJ181328.1|BJ181328
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|208392037|gb|DC941885.1|DC941885
EST:     CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: CGCTCATCTTCAAGCGTGCTCAACAATACCAAGAGGAGTACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
EST: gi|37831104|gb|BJ589116.1|BJ589116
EST:     ACGAGAAGCAG                         GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC
genomic: ACGAGAAGCAGgtgagattct ... tcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctctcccggcactgaatgccttcttaatattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG
                       tcttaat  putative branch site (score: 3)
                                     catccttctcttttac  putative PPT
                      ttcttaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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attcaggtcattgtcaaggcgtgatgtaactgacgtttctccttgttctctcccggcactgaatgccttcttaatattgtggcatccttctcttttacagGAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT