1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaacattcgtgttgtcaggcttcgtcttgagcactgtaaacgtgggttttgaccttattttagcagatgctgatgtgtatctaagaacgttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGAAGGTTGATGCAGAGTTGCTGCTTTCAATTAGATATGGTGTGCTGCCTC
species | Physcomitrella patens |
transcript | PP1S286_16V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGEST: gi|208375555|gb|DC940525.1|DC940525
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGEST: gi|100438348|gb|BY979912.1|BY979912
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGEST: gi|100422558|gb|BY976433.1|BY976433
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGEST: gi|100355587|gb|BY946009.1|BY946009
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
EST: GCACTTGGNGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGG AGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
genomic: GCACTTGGGGTGATGCTCACCTGCAACCTGCGAAATCACCACTTACCTGGgtcagttctt ... ttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGG
ggttttgaccttattttagcagatgctgatgtgtatctaagaacgttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGAAGGTTGATGCAGAGTTGCTGCTTTCAATTAGATATGGTGTGCTGCCTC
tgctgat putative branch site (score: 3)
ttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacattcgtgttgtcaggcttcgtcttgagcactgtaaacgtgggttttgaccttattttagcagatgctgatgtgtatctaagaacgttccgtgcagAGATTATTGAGGCAGCGAATTGGGTGCGAAAGCGTCGTAGAAATTCCCTGGAAGGTTGATGCAGAGTTGCTGCTTTCAATTAGATATGGTGTGCTGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagatgc