1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgggacaattacctttactgtatgctagattttgagcgcatgatatgccacagttggaatgtggatgttgatctaacattggcatttactgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAATTAAAACCGGAGAATTGGTTTCCTTGTCTGAGCAGGAGCTCGTGGACTG
species | Physcomitrella patens |
transcript | PP1S285_10V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGCGCCTGAAGGGGGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGGCGTTTTCTGCGGTCGGTTCGGTTTGA-GGAGTGAATGCEST: gi|162185297|gb|FC360871.1|FC360871
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGG-CGTTTTCTGCGGTCGGTTCGGTT-GAAGGAGTGAATGC
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162186545|gb|FC363309.1|FC363309
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162157752|gb|FC335466.1|FC335466
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100361795|gb|BY947631.1|BY947631
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAEST: gi|100396097|gb|BY972245.1|BY972245
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTT-CTGCGGTCGGTTCGGTTGAAGGAGTGAATGCA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGEST: gi|162265158|gb|FC441245.1|FC441245
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAG
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100397603|gb|BY990309.1|BY990309
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCEST: gi|162255174|gb|FC431484.1|FC431484
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGC
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100405708|gb|BY973814.1|BY973814
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAGGGAGTGEST: gi|100385224|gb|BY950816.1|BY950816
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTG
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|67718463|gb|BJ968722.1|BJ968722
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100388519|gb|BY952121.1|BY952121
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162177962|gb|FC354068.1|FC354068
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100397513|gb|BY990264.1|BY990264
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|67569865|gb|BJ942689.1|BJ942689
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100433239|gb|BY978858.1|BY978858
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162163721|gb|FC340307.1|FC340307
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162172914|gb|FC348919.1|FC348919
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|162234971|gb|FC411758.1|FC411758
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAAEST: gi|100447462|gb|CJ971761.1|CJ971761
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
EST: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTG GGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
genomic: TTGGCGCCTGAAGGGTGCGGTCACGGACGTCAAAGATCAAGGCGCATGTGgtaatggact ... tgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAA
atgccacagttggaatgtggatgttgatctaacattggcatttactgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAATTAAAACCGGAGAATTGGTTTCCTTGTCTGAGCAGGAGCTCGTGGACTG
atctaac putative branch site (score: 30)
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggacaattacctttactgtatgctagattttgagcgcatgatatgccacagttggaatgtggatgttgatctaacattggcatttactgtgattcagGGAGTTGCTGGGCGTTTTCTGCGGTCGGTTCGGTTGAAGGAGTGAATGCAATTAAAACCGGAGAATTGGTTTCCTTGTCTGAGCAGGAGCTCGTGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT