1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acatggaaatggtagaattgcatcttattcacctgatgattagcgtgtgcgaatattcatacgatctctcaggctaacagaaattgttcactgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCCGGATGGGCCCCAAGAGGGAGCTCAAATTCGCCTTGGAGTCTATGTGGG
species | Physcomitrella patens |
transcript | PP1S27_81V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100378044|gb|BY949652.1|BY949652
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|18350543|gb|BJ182594.1|BJ182594
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|18358867|gb|BJ190926.1|BJ190926
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100443800|gb|BY963897.1|BY963897
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100379954|gb|BY968774.1|BY968774
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100405134|gb|BY955379.1|BY955379
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100432089|gb|BY960329.1|BY960329
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|100446848|gb|CJ971147.1|CJ971147
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG GCGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCEST: gi|18358207|gb|BJ190266.1|BJ190266
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
EST: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAG ACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
genomic: CCGGAGGGGACGTTGTCGAGCTCCAGATCCACTGTCCTCTTGCTCCTCAGgttagtgccc ... ctgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCC
tgtgcgaatattcatacgatctctcaggctaacagaaattgttcactgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCCGGATGGGCCCCAAGAGGGAGCTCAAATTCGCCTTGGAGTCTATGTGGG
ggctaac putative branch site (score: 7)
aatattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatggaaatggtagaattgcatcttattcacctgatgattagcgtgtgcgaatattcatacgatctctcaggctaacagaaattgttcactgtctgcagACGTTCTTAGTTAAATCATAAACCATGGCTTCCCACGTAGTCGGATACCCCCGGATGGGCCCCAAGAGGGAGCTCAAATTCGCCTTGGAGTCTATGTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG