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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcccctcgttccactgcctccagttagtaccgatacatgatattgcgtagaaaatgttctccaccatggaagtcgtgagatcttaggcacaatggaagcaatagtcgcgtagcactgaaaatagagacatcattgtggactgtagCGGAAATCGCAGATTGCCCAAGTGCTGTTGACATTGCCGACGTCCTTCGCTCAACTGGGGTATCCTTCAGGAGTGGCATTGCAACTATTCTACGGAATCG

Basic information

species Physcomitrella patens
transcript PP1S279_43V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162155607|gb|FC331545.1|FC331545
EST:     TCCATGGAGGATCTGTCTACGATGTCTGGTTTAGCGCTTGCTC---T---                         ----AAT--CAGATTGCCCAAGTGCTGTTGACGTTGCCGACGTCCTTCGCT
genomic: TCTATGGAGGATCTGTCTACGATGTCTGGTTTAGCGCTTGCTCTAATCAGgtaaagcccc ... tggactgtagCGGAAATCGCAGATTGCCCAAGTGCTGTTGACATTGCCGACGTCCTTCGCT
EST: gi|162254961|gb|FC431146.1|FC431146
EST:     TCTATGGAGGATCTGTCTACGATGTCTGGTTTAGCGCTTGCTCTAATCAG                         CGGAAATCGCAGATTGCCCAAGTGCTGTTGACATTGCCGACGTCCTTCGCT
genomic: TCTATGGAGGATCTGTCTACGATGTCTGGTTTAGCGCTTGCTCTAATCAGgtaaagcccc ... tggactgtagCGGAAATCGCAGATTGCCCAAGTGCTGTTGACATTGCCGACGTCCTTCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggaagcaatagtcgcgtagcactgaaaatagagacatcattgtggactgtagCGGAAATCGCAGATTGCCCAAGTGCTGTTGACATTGCCGACGTCCTTCGCTCAACTGGGGTATCCTTCAGGAGTGGCATTGCAACTATTCTACGGAATCG
                         tgaaaata  TA-rich tract