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gtgattcttctctctgcgtgaattttctgtaattgtttttgatgccattctttttggtttttgaatagcaacgaccatcacctttgtactgtttgcgagtttttaacgtttttttttttttttttttttttttttttttggttttcttactgtgttggggagttgagaattggtgtgatttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTAAAGATAAGGATGGAAACCATATCGAGATGGGTTTACATGTCTTTTTCG
species | Physcomitrella patens |
transcript | PP1S277_10V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGCGGGCATGTCCACCGCTGTCGAGCTTCTCGAGCAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTEST: gi|162170376|gb|FC346781.1|FC346781
genomic: GTCTTGCGGGCATGTCCACCGCTGTTGAGCTTCTCGAGCAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
EST: GTCTTGCGGGCATGTCCACCGCTGTCGAGCTTCTCGAGCAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTEST: gi|18327722|gb|BJ159725.1|BJ159725
genomic: GTCTTGCGGGCATGTCCACCGCTGTTGAGCTTCTCGAGCAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
EST: CAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTEST: gi|162168664|gb|FC343926.1|FC343926
genomic: CAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
EST: GTCTTGCGGGCATGTCCACCGCTGTCGAGCTTCTCGAGCAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTEST: gi|162176795|gb|FC352809.1|FC352809
genomic: GTCTTGCGGGCATGTCCACCGCTGTTGAGCTTCTCGAGCAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
EST: GTCTTGCGGGCATGTCCACCGCTGTCGAGCTTCTCGAGCAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTEST: gi|162166539|gb|FC343236.1|FC343236
genomic: GTCTTGCGGGCATGTCCACCGCTGTTGAGCTTCTCGAGCAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
EST: GTCTTGCGGGCATGTCCACCGCTGTCGAGCTTCTCGAGCAAGGCCACGAG GTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
genomic: GTCTTGCGGGCATGTCCACCGCTGTTGAGCTTCTCGAGCAAGGCCACGAGgtgattcttc ... ttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTT
tttttggttttcttactgtgttggggagttgagaattggtgtgatttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTAAAGATAAGGATGGAAACCATATCGAGATGGGTTTACATGTCTTTTTCG
ttcttac putative branch site (score: 2)
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattcttctctctgcgtgaattttctgtaattgtttttgatgccattctttttggtttttgaatagcaacgaccatcacctttgtactgtttgcgagtttttaacgtttttttttttttttttttttttttttttttggttttcttactgtgttggggagttgagaattggtgtgatttgtgcgcagGTGGATATCTATGAGTCGCGAAAGTTCATTGGTGGTAAAGTGGGGTCCTTTAAAGATAAGGATGGAAACCATATCGAGATGGGTTTACATGTCTTTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG