1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gggaccgtgtgggcgttgttgatgttgatgttcggggacgctgttgaattatcgttgttgtttttgtccaatttctgacatgggagttgtcaaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCACTATTGCAGCTCTTCTACAG
species | Physcomitrella patens |
transcript | PP1S276_27V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAG AAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCEST: gi|100427017|gb|BY977480.1|BY977480
genomic: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
EST: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAG AAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCEST: gi|100402254|gb|BY973294.1|BY973294
genomic: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
EST: GCTCATCGTGCCGGAGCAGCGGGGAAAATGCGCTTCTTGACCTTTCCAAG AGAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCEST: gi|208364640|gb|DC935425.1|DC935425
genomic: GCTCATCGTGCCGGAGCAGCGGG-AAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
EST: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAG AAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCEST: gi|100389661|gb|BY952467.1|BY952467
genomic: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
EST: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAG AAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCEST: gi|208359584|gb|DC934599.1|DC934599
genomic: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
EST: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAG AAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
genomic: AGCTCATCGTGCCGGAGCAGCGGGAAAATGCGCTTCTTGACCTTTCCAAGgtattgggcg ... caaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGC
gaattatcgttgttgtttttgtccaatttctgacatgggagttgtcaaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCACTATTGCAGCTCTTCTACAG
ttctgac putative branch site (score: 3)
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggaccgtgtgggcgttgttgatgttgatgttcggggacgctgttgaattatcgttgttgtttttgtccaatttctgacatgggagttgtcaaattgcagAAAAGAGAAGCTTTTCCAGACTTAGCTCCAATCCTTTGGCATTCTTGCGGCACTATTGCAGCTCTTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - -tgttgaa