1 5' 3' | 2 5' 3' | 3 5' 3' |
...agggctttggtttttcctttggggttaccttggttttgattttgtattgactacgtcagcatgtttatacgttggaatgaactgtgtgtgctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAGGGGCGTTGGCCAAGTGAAGATTCTAGAACACAAGTCAAACAAAAAGGTT
species | Physcomitrella patens |
transcript | PP1S25_241V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTT GAAGGCTAANCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAGEST: gi|100372768|gb|BY948694.1|BY948694
genomic: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTTgtgagtcatg ... ctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAG
EST: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTT GAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAGEST: gi|162211496|gb|FC387368.1|FC387368
genomic: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTTgtgagtcatg ... ctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAG
EST: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTT GAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAG
genomic: GAGGTTGCGATCAGTACCGGAGAAGAAAATGAGGACGTGCTGATTGATTTgtgagtcatg ... ctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAG
attgactacgtcagcatgtttatacgttggaatgaactgtgtgtgctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAGGGGCGTTGGCCAAGTGAAGATTCTAGAACACAAGTCAAACAAAAAGGTT
tattgac putative branch site (score: 2)
ctattctc putative PPT
atgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggctttggtttttcctttggggttaccttggttttgattttgtattgactacgtcagcatgtttatacgttggaatgaactgtgtgtgctattctcagGAAGGCTAAGCTGTATCGGTTTGACAAGGAAGGAACACAATGGAAAGAGAGGGGCGTTGGCCAAGTGAAGATTCTAGAACACAAGTCAAACAAAAAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA