Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcgggctgattttaggggacgatacgactttcgatccatgcattgttaacttctggttgcatgctgaagtgggagatgtgatcttgctttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384851|gb|DC907464.1|DC907464
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67718671|gb|BJ968930.1|BJ968930
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208377750|gb|DC940862.1|DC940862
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208391105|gb|DC938135.1|DC938135
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGGCCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67701644|gb|BJ961877.1|BJ961877
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208374471|gb|DC941200.1|DC941200
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208358178|gb|DC939374.1|DC939374
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67717845|gb|BJ968104.1|BJ968104
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208387137|gb|DC941309.1|DC941309
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208364305|gb|DC935576.1|DC935576
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208364257|gb|DC935528.1|DC935528
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208393656|gb|DC907807.1|DC907807
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67702179|gb|BJ962412.1|BJ962412
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67712527|gb|BJ965976.1|BJ965976
EST:     CATCACCAGCAGATCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: CATCACCAGCAG-TCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67702405|gb|BJ962638.1|BJ962638
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208390335|gb|DC929283.1|DC929283
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208372156|gb|DC936934.1|DC936934
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67703701|gb|BJ963934.1|BJ963934
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67704770|gb|BJ965003.1|BJ965003
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67717320|gb|BJ967579.1|BJ967579
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208357002|gb|DC930032.1|DC930032
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67702926|gb|BJ963159.1|BJ963159
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208353748|gb|DC938773.1|DC938773
EST:     AACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: AACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208370371|gb|DC931783.1|DC931783
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208366720|gb|DC931377.1|DC931377
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208362608|gb|DC931029.1|DC931029
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208353668|gb|DC929711.1|DC929711
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208371487|gb|DC931838.1|DC931838
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208391441|gb|DC937589.1|DC937589
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208374632|gb|DC931971.1|DC931971
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208356923|gb|DC942669.1|DC942669
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67703497|gb|BJ963730.1|BJ963730
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208394247|gb|DC933915.1|DC933915
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208387954|gb|DC932878.1|DC932878
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|18350719|gb|BJ182770.1|BJ182770
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208366660|gb|DC931317.1|DC931317
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67712529|gb|BJ965978.1|BJ965978
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67719593|gb|BJ969852.1|BJ969852
EST:     CATCACCAGCAGATCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: CATCACCAGCAG-TCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67709324|gb|BJ965140.1|BJ965140
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208379536|gb|DC911147.1|DC911147
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACAGGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208369236|gb|DC936051.1|DC936051
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208367245|gb|DC939817.1|DC939817
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|18346805|gb|BJ178850.1|BJ178850
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208377086|gb|DC936818.1|DC936818
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208358975|gb|DC939231.1|DC939231
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208389713|gb|DC933615.1|DC933615
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208346392|gb|DC905297.1|DC905297
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67717657|gb|BJ967916.1|BJ967916
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208374745|gb|DC932028.1|DC932028
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208377653|gb|DC932189.1|DC932189
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208391256|gb|DC933517.1|DC933517
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67720025|gb|BJ970284.1|BJ970284
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67716758|gb|BJ967018.1|BJ967018
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67718893|gb|BJ969152.1|BJ969152
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208346674|gb|DC913320.1|DC913320
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208367164|gb|DC935964.1|DC935964
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67704136|gb|BJ964369.1|BJ964369
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67704422|gb|BJ964655.1|BJ964655
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67716749|gb|BJ967009.1|BJ967009
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208353664|gb|DC929707.1|DC929707
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208393315|gb|DC942455.1|DC942455
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208387871|gb|DC929215.1|DC929215
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208376966|gb|DC936772.1|DC936772
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208394402|gb|DC942562.1|DC942562
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67703535|gb|BJ963768.1|BJ963768
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67719757|gb|BJ970016.1|BJ970016
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208362187|gb|DC935629.1|DC935629
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|18358219|gb|BJ190278.1|BJ190278
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67702150|gb|BJ962383.1|BJ962383
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208383981|gb|DC907372.1|DC907372
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67709790|gb|BJ965606.1|BJ965606
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208390300|gb|DC942037.1|DC942037
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208357017|gb|DC942707.1|DC942707
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208375476|gb|DC940502.1|DC940502
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208372368|gb|DC936484.1|DC936484
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67719949|gb|BJ970208.1|BJ970208
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67717944|gb|BJ968203.1|BJ968203
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|18344805|gb|BJ176846.1|BJ176846
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|67703045|gb|BJ963278.1|BJ963278
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
EST: gi|208389909|gb|DC937740.1|DC937740
EST:     TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGG                         TATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT
genomic: TCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 9

AGTATCAGCCTCGTCCCTCATACCATTCCTCCAGGATACCCCGGGGCCTCATCACCAGCAGTCTCTTCAACACAGCTTCCACCATGGATCCGTACAGGgtgaactctc ... ttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaacttctggttgcatgctgaagtgggagatgtgatcttgctttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG
 tgttaac  putative branch site (score: 9)
                                      tcttgctttttctgc  putative PPT
                                            tttttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catcgggctgattttaggggacgatacgactttcgatccatgcattgttaacttctggttgcatgctgaagtgggagatgtgatcttgctttttctgcagTATCGACCGTCGAGTGCTTACAACACACCGTACATGACCAACAACCAGGGTGGGCCGGTATTTAATAATACCTCGTCTATGACCATCGGCAGTCGGG

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