1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gccccgccattttgataacacttggatctggatgaattttagactttctctgagtaagtgtaagtgtaggagagctgattaggtatcttttatttggcagGGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGTATCTGGCCAATAAAATTCTCTTACTGCGGCGCATGGTGGAGAAGCTCTACCAGCAGTTG
species | Physcomitrella patens |
transcript | PP1S256_73V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGGTCTCCAGGTTTCTCCATCGCCTGCTTGCTTGTATCCTGTCAAG GGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGTGATCTGGCCAEST: gi|208384951|gb|DC903458.1|DC903458
genomic: TCGTTGGTCTCCAGGTTTCTCCATCGCCTGCTTGCTTGTATCCTGTCAAGgtttgtccct ... tatttggcagGGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGT-ATCTGGCCA
EST: TCGTTGGTCTCCAGGTTTCTCCATCGCCTGCTTGCTTGTATCCTGTCAAG GGAGAAGTACACGTTCTGACTACATTTTATTTANTGCAAGTATCTGGCCAA
genomic: TCGTTGGTCTCCAGGTTTCTCCATCGCCTGCTTGCTTGTATCCTGTCAAGgtttgtccct ... tatttggcagGGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGTATCTGGCCAA
ttctctgagtaagtgtaagtgtaggagagctgattaggtatcttttatttggcagGGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGTATCTGGCCAATAAAATTCTCTTACTGCGGCGCATGGTGGAGAAGCTCTACCAGCAGTTG
agctgat putative branch site (score: 5)
tcttttattt putative PPT
tatcttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccccgccattttgataacacttggatctggatgaattttagactttctctgagtaagtgtaagtgtaggagagctgattaggtatcttttatttggcagGGAGAAGTACACGTTCTGACTACATTTTATTTAGTGCAAGTATCTGGCCAATAAAATTCTCTTACTGCGGCGCATGGTGGAGAAGCTCTACCAGCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC