Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT

Basic information

species Physcomitrella patens
transcript PP1S253_7V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggct---gcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
    || |||       ||||  || ||||||||     |       || || |   ||  ||       |   || |   ||| |  | ||||  | |  ||||    | |  | | |  ||  |   |||| |||||||||||||||| ||||| |||||||| |||||| | |||||||||||||||   |||||
--gtacccattt-----ctcctcctcccctccccgcgggcgacgtggtcgtctcgatccggtccg---gctggttgtttcttgtagcgcggtttgatctgattttgtggtcgccctgatgatgttttgcgcagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctt--tccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
         || |  |   | |   ||| |  |  | | ||       | ||    ||   |   |  |  |  | |  | | |   ||   | |||   |   | |  |||    | |     |  | ||| |||||||||| ||||| ||||| |||||||| |||||| | |||||||||||||||   |||||
--------gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttttcgtgggtggcttctgattcgtgtggttt----ccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
                                                      | || | ||   || ||  |  |  |  | ||     ||    |  | |   || |  |       |    | ||| |||||||||| |||||  |||| ||||||||||||||| | || ||||||||||||   |||||
----------------------------------------------------gtaagctactcccggcttttcccacgataggagg--tgtttgtgggaatatagtatctgatctgtgcgcactttccagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
                                                      | || | ||   || ||  | ||  |  | ||     ||    |  | |   || |  |       |    | ||| |||||||||| |||||  |||| ||||||||||||||| | || ||||||||||||   |||||
----------------------------------------------------gtaagctactcccggcctttcccgcgataggcgg--tgtttgtgggaatctagtatctgatctgtgcgcactttccagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G054136_T03 (Zea mays), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
                               | | |   |    ||||      | || | ||   || ||  | ||  |  | ||     ||    |  | |   || |  |       |    | ||| |||||||||| |||||  |||| ||||||||||||||| | || ||||||||||||   |||||
----------------------------gcgcgccgcaacgccaccatgaaggtaagctactcccggcctttcccgcgataggcgg--tgtttgtgggaatctagtatctgatctgtgcgcactttccagTTCAACATCGCGAACCCTTCCACCGGGTGCCAAAAGAAGCTGGAAATCGATGACGACCAGAAGCT

upper sequence: PP1S253_7V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
                                  ||||  || |  | | | |  |||     | ||  ||    | | | |||| ||        ||||  |  ||  | |||| |||    ||||||| ||||||| || || |||||||| |||||||| |||||| | || ||||||||||||   |||||
---------------------------------gtgttgtctctgaaccctaat-tgct----tccgtgtttg--gatatttgtgtgtt-------tgtcgctgaaacat-gttcggtttt--gctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389914|gb|DC937745.1|DC937745
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18358411|gb|BJ190470.1|BJ190470
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|67572029|gb|BJ944853.1|BJ944853
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162208309|gb|FC384621.1|FC384621
EST:     GGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: GGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18353279|gb|BJ185334.1|BJ185334
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18374956|gb|BJ206534.1|BJ206534
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|67577618|gb|BJ949785.1|BJ949785
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18371412|gb|BJ203014.1|BJ203014
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|67702716|gb|BJ962949.1|BJ962949
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|100412712|gb|BY974870.1|BY974870
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|67702230|gb|BJ962463.1|BJ962463
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|67704565|gb|BJ964798.1|BJ964798
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18344515|gb|BJ176556.1|BJ176556
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162258931|gb|FC435874.1|FC435874
EST:     CTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162230562|gb|FC407152.1|FC407152
EST:     CGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|7207694|gb|AW561691.1|AW561691
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208385764|gb|DC932708.1|DC932708
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162216309|gb|FC392102.1|FC392102
EST:     CTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208345545|gb|DC909235.1|DC909235
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208351869|gb|DC913782.1|DC913782
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|18359133|gb|BJ191193.1|BJ191193
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|100352755|gb|BY945432.1|BY945432
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208358888|gb|DC935218.1|DC935218
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208357938|gb|DC938823.1|DC938823
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162238217|gb|FC414303.1|FC414303
EST:     CTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162233728|gb|FC409994.1|FC409994
EST:     CTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208372029|gb|DC936229.1|DC936229
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162278464|gb|FC454550.1|FC454550
EST:     TTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|162169173|gb|FC345140.1|FC345140
EST:     CGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: CGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
EST: gi|208388058|gb|DC941697.1|DC941697
EST:     TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAG                         CTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT
genomic: TCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 23

AATTGGAGAAGCTGGTCGCCCGCTTCCTTCTTTCGCCGTCGCGCTCTTCTCTGAGTGCTTGGGGCACCCAATCCCCGCAACCATGAAGgtacacgcat ... ctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT
                          ttttaat  putative branch site (score: 23)
                                          ttcct  putative PPT
                       tctttttaatttagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacacgcatacgggggctccctctgccctcccctgtttcctttccatcttcacatgccaatcttcgcattcactgctctctgtgggtcagtttcctgtctttttaatttagttcagttcctggctgcagCTCAACATCGCCAACCCCACCACGGGGTGCCAAAAGAAGGTTGAGATCGATGACGACGCCAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT