1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatcacgtgtacctgatgcttggtaaatgctaagatatggagaacaaaggtgggatgaaagtaaaagtattgaccattgacgacgcttgcttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAGTATTACATTCCACTGGAGGATTCTGAAAAGCACAAGCTGGAGTATGAG
species | Physcomitrella patens |
transcript | PP1S250_15V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATG ATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAGEST: gi|100428997|gb|BY977888.1|BY977888
genomic: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATGgtaggtgtct ... cttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAG
EST: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATG ATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAGEST: gi|208361368|gb|DC935083.1|DC935083
genomic: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATGgtaggtgtct ... cttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAG
EST: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATG ATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAG
genomic: CTTATGCAGGACGAGCTGCTCTCGGCCCGCGTAACGTTTCTAGAATCATGgtaggtgtct ... cttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAG
caaaggtgggatgaaagtaaaagtattgaccattgacgacgcttgcttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAGTATTACATTCCACTGGAGGATTCTGAAAAGCACAAGCTGGAGTATGAG
cttgctt CT-rich tract
aaagtaaaagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcacgtgtacctgatgcttggtaaatgctaagatatggagaacaaaggtgggatgaaagtaaaagtattgaccattgacgacgcttgcttggagcagATTCGGTTTATACTTCTGCAGAATCGGCAGGGAAAAACTCGCCTTGCCAAGTATTACATTCCACTGGAGGATTCTGAAAAGCACAAGCTGGAGTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA