1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttttagccgttactcagtttgtgtgatgtcgttggttttgtccaggttgatacggcatcggtttaagcgtgatttttcttggtggagatttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAGAGCATCCAATGG
species | Physcomitrella patens |
transcript | PP1S249_49V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAGEST: gi|162269518|gb|FC445074.1|FC445074
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
EST: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAGEST: gi|162269519|gb|FC445075.1|FC445075
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
EST: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACG CGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
genomic: CGTCTCTTCACCCTTTTCTCTTGAGCAACCACCGGAGTGCGCTACTTACGgtgcgtcgac ... ttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAG
ggttgatacggcatcggtttaagcgtgatttttcttggtggagatttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAGAGCATCCAATGG
ggttgat putative branch site (score: 5)
tttctctgc putative PPT
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttagccgttactcagtttgtgtgatgtcgttggttttgtccaggttgatacggcatcggtttaagcgtgatttttcttggtggagatttctctgcagCGTAGGTGTCGTAAGCGGAGGCAACCATGGCGAAAAACTCGTTCAAGCAAGAGCATCCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA