1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcgtgttggtggcggaagaggggcgcgtgcatgatttttggttatatcacgattctttatgtgtttggttatgataggacacgtgctcttcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATTGCCTTACAGGCCCGAAATGCTGAATATAACCCTAAG
species | Physcomitrella patens |
transcript | PP1S246_34V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|100438401|gb|BY979938.1|BY979938
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|100441350|gb|BY962639.1|BY962639
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|208354942|gb|DC914206.1|DC914206
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|208376207|gb|DC910783.1|DC910783
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|208373747|gb|DC936560.1|DC936560
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTAGATTTAAAGAAAATEST: gi|7067233|gb|AW497088.1|AW497088
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|208360850|gb|DC934746.1|DC934746
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|100430149|gb|BY978271.1|BY978271
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|100410692|gb|BY992221.1|BY992221
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATEST: gi|18373885|gb|BJ205463.1|BJ205463
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
EST: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCA GAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
genomic: CAGCCTGTGGACCTTGCCAAACATCCCTCCGGCATCATTCCTACGCTGCAgtaagtgtcg ... tcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAAT
tatcacgattctttatgtgtttggttatgataggacacgtgctcttcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATTGCCTTACAGGCCCGAAATGCTGAATATAACCCTAAG
tgctcttctt CT-rich tract
attctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgtgttggtggcggaagaggggcgcgtgcatgatttttggttatatcacgattctttatgtgtttggttatgataggacacgtgctcttcttgtgcagGAATATTGTCTCAACTGTTAATATGGATTGTCGCTTGGATTTAAAGAAAATTGCCTTACAGGCCCGAAATGCTGAATATAACCCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG