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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG

Basic information

species Physcomitrella patens
transcript PP1S242_94V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactc-gtttctttgc-gtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                   ||   ||| ||| || | | | |        |||   |  | | ||    ||  || |          |||  ||| |  | |||          || || |   |||||||| || ||||| ||||| || |||||||| || ||| |||||||||| ||||| |||||    |||||||||||||| || || || || || ||||
-----------------------------------gtaagctccgttcctctcccgcatctcccctttgcagtggtctctttgcgcaggtgctaagggg----aggaatcgcgtgtgtgt---------ttgatttttg-cagTCGCTGATCGCGGGGGAGGATTTCCAGCACATCCTGCGTCTGCTGAACACGAACGTGGATGGGAAGCAGAAGATCATGTTCGCGCTCACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
             |   ||| | |   |   | || ||  |||  |||   |  | ||||  |  |  |  |      || ||  | ||    || ||      ||| | || |||||  | |               |||||||| || || || ||||| || |||||||| || ||| |||||||||| |||||||||||    |||||||||||||| || || || || || ||||
-------------gtaaccttctcgctcgcttctcctctcctccattccc-gtctccgattcgccttctcgtgacgcctcctctgactg----actctc-----gttggcgcttctgtccccg---------------cagTCGCTGATCGCCGGGGAGGACTTCCAGCACATCCTGCGTCTGCTGAACACCAACGTCGATGGGAAGCAGAAGATCATGTTCGCGCTCACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G062911_T01 (Zea mays), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgt-acacttctagggttcgtgc-atctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                                           | |||      |  |   | |  |    |||  | ||   ||   | || ||   |   | |  ||  |  ||| | ||  |||||||| |||||||| ||||| ||||||||||| || ||| |||| ||||| ||||| |||||    |||||||||||||||||||| || || || ||||
----------------------------------------------------------gtaagagc----tcctccctaccccattttgtcatcacgggtcggcgattagtctgacacgcggttggca-ttggctttg--cagTCGCTGATTGCGGGGGAGGACTTTCAGCACATCCTGCGTTTGCTTAACACCAACGTGGATGGCAAGCAGAAGATCATGTTTGCCCTCACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA20G30970.1 (Glycine max), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtga-acagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
            || | ||    |||  | | |       | ||   | ||   |   |  | |   ||| |||        |  |||   |||     ||    ||  |   | ||||  |        ||||||   ||||| ||  | |||  |||||| || ||||||||||| |||||||||||||| ||||| |||||    |||||||| ||||| ||  |||| || || ||||
---------gtacgttcccatttcatcgaacctctccgagcgcga--cgttaattgaaaaaaaaggattactttgaggaacccttaat-cggtaa----ctgaatttgttttttttgtgtgttgtgctgtgttgtgttgcagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCTATGACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA10G36610.2 (Glycine max), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
|||||   ||||   ||| || |    |  ||  | ||    ||||  ||        |  |||||    |||      |    ||  | | |    || |    ||  |   | ||||            |||    ||||| ||  | |||  |||||| || ||||||||||| |||||||||||||| ||||| |||||    |||||||| ||||| ||  |||| || || ||||
gtgcgctctcattatttcatcgc---acctctcccttcacaacgttgattgaaaagaaaaaagattcaattttgaggaacccttaatcgatatctgattttt---tttttttgtgtgtg------------ttg----cagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G08690.1 (Glycine max), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatg----ttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
|| ||  |||| || ||||          | ||| |   |        | | |  | |||  | ||  | ||||      ||| ||| |    || |     |||    || | | |        | |||     |||   |||||| ||  | |||  |||||| || ||||||||||| |||||||||||||| ||||| |||||    |||||||| ||||| || || || || || || |
gtacgatttcagcgtttcc-----gaattgattttgataaacaaagattcttcaaaagattcgttttatcttttggcaatttcaaaaggcgatttttttggctctgtttttggaggagtcacattttaaatggttttgcttacagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTAGATGGGAAGCAGAAGATAATGTTCGCTCTCACCTCTATCAAAG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA10G36610.3 (Glycine max), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
  |||   ||||   ||| || |    |  ||  | ||    ||||  ||        |  |||||    |||      |    ||  | | |    || |    ||  |   | ||||            |||    ||||| ||  | |||  |||||| || ||||||||||| |||||||||||||| ||||| |||||    |||||||| ||||| ||  |||| || || ||||
--gcgctctcattatttcatcgc---acctctcccttcacaacgttgattgaaaagaaaaaagattcaattttgaggaacccttaatcgatatctgattttt---tttttttgtgtgtg------------ttg----cagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA10G36880.3 (Glycine max), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
|||||    |||   ||  |  |    |  ||  | ||    ||||  ||   | || || | |   || | ||||      ||     | |   |||     | ||  |   | ||||  ||        |||    ||||| ||  | |||  |||||| || ||||||||||| |||||||||||||| ||||| |||||    |||||||| ||||| ||  |||| || || ||||
gtgcgctcccattattttattgc---acctctcccttcacaacgttgatt---gaacaataaaaggattctattttgaggaacccttaatcgataact-----gatttctttttttgtgtgtg--------ttg----cagTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT1G34030.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                    ||           |  || ||    || ||    || | | ||  |       || |  |  | | |     ||   | ||||| |      |   ||     |||| ||  ||||    ||||| |||||||||||| | |||||||| ||||||||||| |||||    || ||||| ||||||||||| || || || || |
-----------------------------------atcagagaaccaagtatcgaacagaaagtttag-gttatgtgttgattagggaatttttgatgtttgg---ctgtaattgtgtgatttttg--ttactgcatgtagTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTTTGCGTGTGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G09800.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatga-gattgttatttttttttcttccaaatgttgt-acacttcta--gggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                           ||      | ||| | |||  | | ||   |||||||  |  |  |  ||| | | | ||   |||||  |  |  | ||  |    | || |||||   |||| ||  ||||    ||||| ||||| ||||||||||||||| |||| ||||| || |||||    |||||||| ||||||||||| || || || || |
----------------------------------------aatgtaatcgcgagtaagttgataaattttgcgttttttttgtttagtttatgtgaaattactgatgggttaattgaattttgtgtt---gttgattgtg--tagTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTATCAAAG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttat--ttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                                     ||  | || | ||||| |  ||| | ||    ||| | ||||         || |   ||    | ||      |  ||| | |   ||||| ||  ||||   |||||||||||||||||||||||||||||| ||||| |||||||||||    |||||||||||||||||||| ||||| || ||||
-----------------------------------------------------gtgag-tgggcttgttttcatttctgttaaatcaattcttgtgtcgaatatggttgtttgttgttatgttaatgaattggattttg-cagTCTCTTGTTGCAAACGAGGAATTTCAGCACATTCTTCGTGTGCTCAACACCAACGTCGATGGGAAGCAGAAGATCATGTTTGCCCTCACTTCCATCAAGG

upper sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 1
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG
                                                                                       | |  | |   | | ||||      ||      | |    ||   | |   ||||| ||  |       ||||| || |||||||||||||||||||| ||||| || || || || || |||||||| ||||| || |||||||| || ||||
--------------------------------------------------------------------------------------gtatgattcttgtgttgggtgttgaaataatcctccggcgcctctgttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACGAATGTGGACGGGCGGCAGAAGATTATGTTCGCGCTGACTTCCATCAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270454|gb|FC447570.1|FC447570
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208388454|gb|DC945646.1|DC945646
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGNTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|37824857|gb|BJ582923.1|BJ582923
EST:     CTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67719459|gb|BJ969718.1|BJ969718
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208348604|gb|DC913262.1|DC913262
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208377348|gb|DC906631.1|DC906631
EST:     CGTCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162216885|gb|FC392222.1|FC392222
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67709415|gb|BJ965231.1|BJ965231
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTCCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67728071|gb|BJ978330.1|BJ978330
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGNCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162267680|gb|FC443462.1|FC443462
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGNTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162241838|gb|FC418093.1|FC418093
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67692173|gb|BJ952406.1|BJ952406
EST:     TCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: TCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|18345778|gb|BJ177821.1|BJ177821
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67701910|gb|BJ962143.1|BJ962143
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162228034|gb|FC405655.1|FC405655
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67718008|gb|BJ968267.1|BJ968267
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162222064|gb|FC398631.1|FC398631
EST:     GCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: GCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208377306|gb|DC927022.1|DC927022
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67697377|gb|BJ957610.1|BJ957610
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67698290|gb|BJ958523.1|BJ958523
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208395095|gb|DC920508.1|DC920508
EST:     CGTCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162266888|gb|FC443002.1|FC443002
EST:     CCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162264380|gb|FC440546.1|FC440546
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67719129|gb|BJ969388.1|BJ969388
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|37835040|gb|BJ593052.1|BJ593052
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67727741|gb|BJ978000.1|BJ978000
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67568960|gb|BJ941784.1|BJ941784
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162241839|gb|FC418094.1|FC418094
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162267681|gb|FC443463.1|FC443463
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|18353569|gb|BJ185624.1|BJ185624
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|18363454|gb|BJ195526.1|BJ195526
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67574864|gb|BJ947688.1|BJ947688
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|208365082|gb|DC931132.1|DC931132
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67703623|gb|BJ963856.1|BJ963856
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67573988|gb|BJ946812.1|BJ946812
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67726563|gb|BJ976822.1|BJ976822
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67704416|gb|BJ964649.1|BJ964649
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162228035|gb|FC405656.1|FC405656
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGGTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67726509|gb|BJ976768.1|BJ976768
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|162270453|gb|FC447569.1|FC447569
EST:     CATCGCCAGCCNCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67720399|gb|BJ970658.1|BJ970658
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|37824890|gb|BJ582956.1|BJ582956
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67727442|gb|BJ977701.1|BJ977701
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|67719094|gb|BJ969353.1|BJ969353
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
EST: gi|18345743|gb|BJ177786.1|BJ177786
EST:     CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATG                         TCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT
genomic: CATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 176

TTGCTCTTTCGCTGCTCGCGCTTTCTCTGCTTCGTGCCATCGCCAGCCCCACGCTGTGCCTCGCCTCGCTGCGTCTCAGCCACCATGgtgcgtgttc ... ttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtgttcatcgcttcctccccatgcagctttcgtcgactcgtttctttgcgtacgatgagattgttatttttttttcttccaaatgttgtacacttctagggttcgtgcatctgtgactgaaagctggttgtgaacagTCGCTCATTGCGGGCGAGGAATTTCAGCACATTCTTCGTGTGCTGAACACTAACGTCGATGGACGTCAGAAGATCATGTTTGCCCTGACTTCGATTAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA