1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcatattggtgtcggagtttgtagtggtagcgagttatagaaatgccagtcggtacagtgatgtgttgacaagttttaagagtgtggcaactgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAGAATCCAGGTTACTCCTACCGTTGGCGCAGAGTGCTGTTGAAAGTCAGC
species | Physcomitrella patens |
transcript | PP1S241_40V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|208380368|gb|DC907693.1|DC907693
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGANCTCAAAEST: gi|100374333|gb|BY985757.1|BY985757
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|208346332|gb|DC912767.1|DC912767
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|162165351|gb|FC341970.1|FC341970
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|162254003|gb|FC430637.1|FC430637
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|100445028|gb|BY964327.1|BY964327
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCANGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|100403657|gb|BY955036.1|BY955036
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|162189095|gb|FC365213.1|FC365213
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|208390678|gb|DC937834.1|DC937834
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|100440818|gb|BY980638.1|BY980638
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGAAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|100373420|gb|BY949317.1|BY949317
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAEST: gi|208384653|gb|DC907112.1|DC907112
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
EST: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAG GTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
genomic: ACTCATGCCCTTGGATCCCTCCCCGATCTGGACATGTTCAATGATCCGAGgtgggttcct ... actgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAA
gccagtcggtacagtgatgtgttgacaagttttaagagtgtggcaactgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAGAATCCAGGTTACTCCTACCGTTGGCGCAGAGTGCTGTTGAAAGTCAGC
tgttgac putative branch site (score: 3)
aagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatattggtgtcggagtttgtagtggtagcgagttatagaaatgccagtcggtacagtgatgtgttgacaagttttaagagtgtggcaactgttgcagGTCTTTCGAGGAAGACTTCAGGAAAACGGGATTGTCAACCATGAGCTCAAAGAATCCAGGTTACTCCTACCGTTGGCGCAGAGTGCTGTTGAAAGTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT