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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttgcgacacaagtgtagcttctgtgtgtcctctattgattaatgctcgatatacttttgatattgatggtaggttggctgtgaaattgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGAGCGGTTATGTGCATGTTAGGGTGCAGCAGCGGAATGGACGAAAGAGCTT

Basic information

species Physcomitrella patens
transcript PP1S23_225V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37829462|gb|BJ587474.1|BJ587474
EST:     GTCGGGGTTCATGTTGGAGTTATAGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162276238|gb|FC452397.1|FC452397
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18354597|gb|BJ186654.1|BJ186654
EST:     GTCGGGGTTCATGTTGGAGTTATAGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67716152|gb|BJ966412.1|BJ966412
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|208358729|gb|DC935171.1|DC935171
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67576100|gb|BJ948924.1|BJ948924
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAAATGTTGAGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAA-TGTTGAGGA
EST: gi|67724672|gb|BJ974931.1|BJ974931
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37839287|gb|BJ597295.1|BJ597295
EST:     TCGGGGTTCCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: TCGGGGTT-CATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67727534|gb|BJ977793.1|BJ977793
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37829000|gb|BJ587012.1|BJ587012
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCNTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67508278|gb|BJ941147.1|BJ941147
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37834738|gb|BJ592750.1|BJ592750
EST:     TGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: TGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67700170|gb|BJ960403.1|BJ960403
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37834966|gb|BJ592978.1|BJ592978
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67577616|gb|BJ949783.1|BJ949783
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67725936|gb|BJ976195.1|BJ976195
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162208525|gb|FC384488.1|FC384488
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18348955|gb|BJ181004.1|BJ181004
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67693062|gb|BJ953295.1|BJ953295
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162251362|gb|FC427679.1|FC427679
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67508391|gb|BJ941258.1|BJ941258
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18325549|gb|BJ157546.1|BJ157546
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67578564|gb|BJ950731.1|BJ950731
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18332980|gb|BJ164994.1|BJ164994
EST:     TCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: TCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162208526|gb|FC384489.1|FC384489
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18333511|gb|BJ165526.1|BJ165526
EST:     AGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: AGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37844022|gb|BJ602030.1|BJ602030
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18353513|gb|BJ185568.1|BJ185568
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162237866|gb|FC413949.1|FC413949
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67576636|gb|BJ949460.1|BJ949460
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37846621|gb|BJ604629.1|BJ604629
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162237867|gb|FC413950.1|FC413950
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18344816|gb|BJ176857.1|BJ176857
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67704592|gb|BJ964825.1|BJ964825
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18341166|gb|BJ173199.1|BJ173199
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGGAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18325009|gb|BJ157005.1|BJ157005
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37839092|gb|BJ597100.1|BJ597100
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67704145|gb|BJ964378.1|BJ964378
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGAC
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGAC
EST: gi|18353493|gb|BJ185548.1|BJ185548
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAG
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAG
EST: gi|18373524|gb|BJ205102.1|BJ205102
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67701465|gb|BJ961698.1|BJ961698
EST:     GGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGGTAGGTTCCAAAGGG
genomic: GGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGC-GGGGTAGGTTCCAAAGGG
EST: gi|18366414|gb|BJ198493.1|BJ198493
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18361373|gb|BJ193439.1|BJ193439
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67703052|gb|BJ963285.1|BJ963285
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTA
EST: gi|37834987|gb|BJ592999.1|BJ592999
EST:     GGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37824019|gb|BJ582085.1|BJ582085
EST:     TCGGGGTTCCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: TCGGGGTT-CATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67717419|gb|BJ967678.1|BJ967678
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67720039|gb|BJ970298.1|BJ970298
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18332426|gb|BJ164439.1|BJ164439
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67699591|gb|BJ959824.1|BJ959824
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18361585|gb|BJ193651.1|BJ193651
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162251363|gb|FC427680.1|FC427680
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|37835920|gb|BJ593932.1|BJ593932
EST:     TCGGGGTTCCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: TCGGGGTT-CATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67697219|gb|BJ957452.1|BJ957452
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67719232|gb|BJ969491.1|BJ969491
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18350027|gb|BJ182078.1|BJ182078
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18353274|gb|BJ185329.1|BJ185329
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|162276237|gb|FC452396.1|FC452396
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18340248|gb|BJ172276.1|BJ172276
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18341764|gb|BJ173799.1|BJ173799
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|18366242|gb|BJ198320.1|BJ198320
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|208388299|gb|DC949299.1|DC949299
EST:     GTCGGGGTTCATG-TGGAG-TATCGGACACNGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67728297|gb|BJ978556.1|BJ978556
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67573832|gb|BJ946656.1|BJ946656
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
EST: gi|67569793|gb|BJ942617.1|BJ942617
EST:     GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTG                         ATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA
genomic: GTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 94

GCAACGCTCGCCACAATTGCAGACCCTGTGCAGAAGCGGTCCGAAACCACGTCGGGGTTCATGTTGGAGTTATCGGACACGGAGATTCCGGCCTCTTTTGgtatgttcca ... tgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGAGCGGTTATGTGCATGTTAGGGTGCAGCAGCGGAATGGACGAAAGAGCTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctcgatatacttttgatattgatggtaggttggctgtgaaattgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGAGCGGTTATGTGCATGTTAGGGTGCAGCAGCGGAATGGACGAAAGAGCTT
       atatacttttgatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acttttgcgacacaagtgtagcttctgtgtgtcctctattgattaatgctcgatatacttttgatattgatggtaggttggctgtgaaattgatgtgcagATCCATTCGCGGAAGCGAATGTTGAGGACAGCGGGGTAGGTTCCAAAGGGAGCGGTTATGTGCATGTTAGGGTGCAGCAGCGGAATGGACGAAAGAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT