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gtgcggtgatctctccttgcttctttttattttgtttgtttgggattgcttttcatggatatgtacaactacaaaaaaaatcttaggattttgcggaagttctttttcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGG
species | Physcomitrella patens |
transcript | PP1S235_102V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|100372101|gb|BY967706.1|BY967706
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|67574019|gb|BJ946843.1|BJ946843
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAEST: gi|18373677|gb|BJ205255.1|BJ205255
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
EST: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGG GCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
genomic: AGCGTTGATGTGTATGAGAAAATTGAGCAGATTGGAGAGGGGACTTATGGgtgcggtgat ... tcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAA
tgtacaactacaaaaaaaatcttaggattttgcggaagttctttttcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGG
ttctttttcttttgc CT-rich tract
tacaaaaaaaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggtgatctctccttgcttctttttattttgtttgtttgggattgcttttcatggatatgtacaactacaaaaaaaatcttaggattttgcggaagttctttttcttttgcagGCAAGTTTACATGGCGAAAGACAAAGTTACGGGCGAAGTTGTTGCGCTGAAGAAAGTTCGTATGGACAATGAGAAAGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG