1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggatgactgcgttgcaacgttgattgacatctaagagtttccactgcttcttatttgagctaggtgactgatgtgtgttcccatcgcaatgctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCGAGCTCGAAGAGAGATATGACCAG
species | Physcomitrella patens |
transcript | PP1S234_46V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|100439014|gb|BY961917.1|BY961917
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCCAATTGCCEST: gi|67570256|gb|BJ943080.1|BJ943080
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|208391184|gb|DC938158.1|DC938158
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAGTAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|100409884|gb|BY956152.1|BY956152
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAT GTCCGGGAGCTTGCAAATAAGACAGGCATGAATTTTACTGACCAAATTGCCEST: gi|208397563|gb|DC912181.1|DC912181
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|100399143|gb|BY954221.1|BY954221
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|67718764|gb|BJ969023.1|BJ969023
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|208363866|gb|DC943323.1|DC943323
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|208363993|gb|DC939586.1|DC939586
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|208389733|gb|DC938309.1|DC938309
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCEST: gi|100356295|gb|BY946293.1|BY946293
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
EST: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAA GTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
genomic: CTCTCCCCTTTGAGAGACCCATTGTCGACCTCGAGAATAAGATTGATGAAgtgagtagct ... gctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCC
gcttcttatttgagctaggtgactgatgtgtgttcccatcgcaatgctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCGAGCTCGAAGAGAGATATGACCAG
gactgat putative branch site (score: 6)
ttatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgactgcgttgcaacgttgattgacatctaagagtttccactgcttcttatttgagctaggtgactgatgtgtgttcccatcgcaatgctgcaacagGTCCGGGAGCTTGCAAATAAGACAGGCATGGATTTTACTGACCAAATTGCCGAGCTCGAAGAGAGATATGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA