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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgaagaatttatgaggagaccaggttatactgaagtataattagtggtcagcattgcgttgtctttggaactgatcagtaacatgcaatttttgcagGATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTCGGAATATCGTCAATATGGCGATAACGAATATTACGAGTACCCTAGAAAT

Basic information

species Physcomitrella patens
transcript PP1S231_3V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100428221|gb|BY977694.1|BY977694
EST:     CTGCAATCAAAGGGTTCCTGTCTTCGACGCTGATCTGTAGTCGACTACAG                         GATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTC
genomic: CTGCAATCAAAGGGTTCCTGTCTTCGACGCTGATCTGTAGTCGACTACAGgtacactcat ... atttttgcagGATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTC
EST: gi|100429091|gb|BY977935.1|BY977935
EST:     CTGCAATCAAAGGGTTCCTGTCTTCGACGCTGATCTGTAGTCGACTACAG                         GATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTC
genomic: CTGCAATCAAAGGGTTCCTGTCTTCGACGCTGATCTGTAGTCGACTACAGgtacactcat ... atttttgcagGATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggtcagcattgcgttgtctttggaactgatcagtaacatgcaatttttgcagGATAAGTTAAGAAGTAGGCATGAAGTGGCTGAAGAGATTACTAGGCCACTCGGAATATCGTCAATATGGCGATAACGAATATTACGAGTACCCTAGAAAT
                                 cagtaac  putative branch site (score: 2)
                                              tttttgc  putative PPT
                                            aattttt  TA-rich tract