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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtgcctcgactaggtgttaacatcatcagtatctcccctgtgtacatgtgaatagcgaacaactaccctaacatggtatgttcgttcttgtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGGAATGGATACGCGAATTCAGATCTTAGCCCTGCACCCACTCCCACAGGTC

Basic information

species Physcomitrella patens
transcript PP1S22_60V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389486|gb|DC942193.1|DC942193
EST:     AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAG                         ATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
genomic: AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAGgttggatatc ... gtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
EST: gi|18361010|gb|BJ193074.1|BJ193074
EST:     AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAG                         ATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
genomic: AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAGgttggatatc ... gtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
EST: gi|162163241|gb|FC339359.1|FC339359
EST:     AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAG                         ATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
genomic: AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAGgttggatatc ... gtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
EST: gi|18364520|gb|BJ196593.1|BJ196593
EST:     AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAG                         ATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
genomic: AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAGgttggatatc ... gtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
EST: gi|18359864|gb|BJ191925.1|BJ191925
EST:     AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAG                         ATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG
genomic: AGGTGTCCCCCCTCAGGAATCGGGATGCTTCATCTGTGAACAACCTTCAGgttggatatc ... gtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgaatagcgaacaactaccctaacatggtatgttcgttcttgtcgcaacagATGAAGAGGAGGAATGAGTGTGAAGAACACCACGTTGAGATGAACGGCTGGAATGGATACGCGAATTCAGATCTTAGCCCTGCACCCACTCCCACAGGTC
                     ccctaac  putative branch site (score: 2)
                                        ttcttgtc  putative PPT