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...tcatttgcttgatgcattatgtacagatgatttgtacttttggaggatctctagggtttatgggctgtttatcagtctaagtgatgtagccttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAAATTCATGTCAATTTCATGGCTTTGAAGTATCAGGGTGTGAATAAGAATT
species | Physcomitrella patens |
transcript | PP1S223_54V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAG GAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAAEST: gi|18361013|gb|BJ193077.1|BJ193077
genomic: TCGTTGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAGgtttgtgagc ... cttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAA
EST: TGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAG GAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAAEST: gi|18374215|gb|BJ205793.1|BJ205793
genomic: TGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAGgtttgtgagc ... cttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAA
EST: TCGTTGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAG GAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAA
genomic: TCGTTGCGGAGGGATTTGTTGCATTGGATTTTACAGGAGATAATCGCTAGgtttgtgagc ... cttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAA
gatctctagggtttatgggctgtttatcagtctaagtgatgtagccttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAAATTCATGTCAATTTCATGGCTTTGAAGTATCAGGGTGTGAATAAGAATT
ccttgtc CT-rich tract
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttgcttgatgcattatgtacagatgatttgtacttttggaggatctctagggtttatgggctgtttatcagtctaagtgatgtagccttgtcgcagGAGCTGGTTGGAATACGGAGCTTGTATTGACATTGTATCATGGATGATCAAATTCATGTCAATTTCATGGCTTTGAAGTATCAGGGTGTGAATAAGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - -tgatgca