1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttggtggttagattggtgagcaatgtgggtggtggctgggtgaatcagttgcattgtatcgtattgttgattggagtaggggagatggggttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGACGTTCTACGATGGCTTCCTGGCCAAAATTGTGATTGGGGAGGGAGAGAC
species | Physcomitrella patens |
transcript | PP1S223_50V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|208363152|gb|DC931232.1|DC931232
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|162172650|gb|FC348031.1|FC348031
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|100412904|gb|BY992493.1|BY992493
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|162185525|gb|FC361249.1|FC361249
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|18331587|gb|BJ163598.1|BJ163598
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|162190855|gb|FC368053.1|FC368053
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|18349448|gb|BJ181497.1|BJ181497
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|162179670|gb|FC355728.1|FC355728
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|18357279|gb|BJ189338.1|BJ189338
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGEST: gi|100405399|gb|BY955505.1|BY955505
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGG-TGGTGGAGTCCGATAAGGCCGACATGGATGTAGAG
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|208372449|gb|DC936523.1|DC936523
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|67704739|gb|BJ964972.1|BJ964972
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|67569068|gb|BJ941892.1|BJ941892
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|208391841|gb|DC938003.1|DC938003
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|208394254|gb|DC933922.1|DC933922
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|100443970|gb|BY982198.1|BY982198
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGAEST: gi|208389966|gb|DC938021.1|DC938021
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
EST: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAG GTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
genomic: AGGCAAAATCGTGGCGTGGAATAAGACCGAAGGCGAGAAGCTTACCAAAGgtattgttgc ... gttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGA
tcagttgcattgtatcgtattgttgattggagtaggggagatggggttatatcagGTGAGAGCGTCGTGGTGGTGGAGTCCGATAAGGCCGACATGGATGTAGAGACGTTCTACGATGGCTTCCTGGCCAAAATTGTGATTGGGGAGGGAGAGAC
tgttgat putative branch site (score: 8)
ttatatca TA-rich tract