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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttttttttttaatgcgtagttttcaagcatgtcactaacgtctgtctctgatacgcttttcaattttcttagcgtcgtttttctttgcctgttgcagCCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCT

Basic information

species Physcomitrella patens
transcript PP1S222_25V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162274283|gb|FC450251.1|FC450251
EST:     GGACGCCGGAACAGTCAGGGCGGTTGACATTTCCGATCGCGTTGAAGCAG                         CCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACT
genomic: GGACGCCGGAACAGTCAGGGCGGTTGACATTTCCGATCGCGTTGAAGCAGgtgtgtgaga ... cctgttgcagCCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACT
EST: gi|18354092|gb|BJ186147.1|BJ186147
EST:     GGACGCCGGAACAGTCAGGGCGGTTGACATTTCCGATCGCGTTGAAGCAG                         CCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACT
genomic: GGACGCCGGAACAGTCAGGGCGGTTGACATTTCCGATCGCGTTGAAGCAGgtgtgtgaga ... cctgttgcagCCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctctgatacgcttttcaattttcttagcgtcgtttttctttgcctgttgcagCCCGGGCCTCGAGAAAACACTGTACAATGCTTCATAAAGCGGGACAGGACTACTTCCACGTACCAGCTTTTTCTTGGTCTTCCTCCCT
   ctctgat  putative branch site (score: 4)
                                tcgtttttctttgcct  putative PPT
              ttttcaattttctta  TA-rich tract