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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatataacaatgtatgtgttaaccaagtagtttacgcattgaaagcaatagatcttgcatgacgatatatttacgaactcaaattttgtcttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACAGCAGCAATCGGCTCGCGGACGTTTTAGAATGGGTGTTACCGCTGAGAAG

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162200922|gb|FC377325.1|FC377325
EST:     CATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18370288|gb|BJ201890.1|BJ201890
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18367574|gb|BJ199657.1|BJ199657
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATANCTCCAAGTACTGNCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18374528|gb|BJ206106.1|BJ206106
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|67570167|gb|BJ942991.1|BJ942991
EST:     TTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: TTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|100443300|gb|BY963596.1|BY963596
EST:     TTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: TTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18362678|gb|BJ194749.1|BJ194749
EST:     ATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: ATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|67574627|gb|BJ947451.1|BJ947451
EST:     TTGACAGTGGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACAC
genomic: TTGACAGT-GTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACAC
EST: gi|18372863|gb|BJ204465.1|BJ204465
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18365275|gb|BJ197349.1|BJ197349
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18374599|gb|BJ206177.1|BJ206177
EST:     ATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: ATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18365381|gb|BJ197456.1|BJ197456
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18358877|gb|BJ190936.1|BJ190936
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|162220370|gb|FC395738.1|FC395738
EST:     GTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: GTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18363986|gb|BJ196059.1|BJ196059
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|162196667|gb|FC374632.1|FC374632
EST:     GATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: GATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18347979|gb|BJ180026.1|BJ180026
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18365214|gb|BJ197288.1|BJ197288
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|162257683|gb|FC433610.1|FC433610
EST:     TGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: TGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18350462|gb|BJ182513.1|BJ182513
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18373428|gb|BJ205006.1|BJ205006
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|162168431|gb|FC344407.1|FC344407
EST:     GATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: GATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|67575808|gb|BJ948632.1|BJ948632
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18359898|gb|BJ191959.1|BJ191959
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18374996|gb|BJ206574.1|BJ206574
EST:     ATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: ATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18360287|gb|BJ192349.1|BJ192349
EST:     GCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: GCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|67571123|gb|BJ943947.1|BJ943947
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|100434971|gb|BY960896.1|BY960896
EST:     CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: CGTCTCCCCTCGCAGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
EST: gi|18355255|gb|BJ187314.1|BJ187314
EST:     AGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGG                         GTTTCGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA
genomic: AGCCATTGCTTCTCTTGTGATTCATTGACAGTGTTGGgtaagcttgc ... cttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatagatcttgcatgacgatatatttacgaactcaaattttgtcttgccacagGTTTTGAAATTTGAAAATCCCAAAGAATAGCTCCAAGTACTGTCAGACACAGCAGCAATCGGCTCGCGGACGTTTTAGAATGGGTGTTACCGCTGAGAAG
                                       ttttgtctt  CT-rich tract
                    atatattta  TA-rich tract