1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttttttctgcgccttgagtatggcgcgcctggttcatggttggatatgtatgttagtctgaggtcttgctgggggggtgtagtagcatggggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG
species | Physcomitrella patens |
transcript | PP1S218_133V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|162176626|gb|FC352471.1|FC352471
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100393599|gb|BY953447.1|BY953447
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208384557|gb|DC915029.1|DC915029
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208393155|gb|DC907978.1|DC907978
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAGCGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100386909|gb|BY988178.1|BY988178
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208367277|gb|DC939835.1|DC939835
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100362918|gb|BY947594.1|BY947594
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208373514|gb|DC931917.1|DC931917
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|18357560|gb|BJ189619.1|BJ189619
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGNNNNNNNTEST: gi|100423272|gb|BY958215.1|BY958215
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAG-AAAAAAT
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGGAAGAAAAAATCEST: gi|162260448|gb|FC435061.1|FC435061
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208351808|gb|DC910362.1|DC910362
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCANCGCANAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|7207601|gb|AW561648.1|AW561648
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100377926|gb|BY986463.1|BY986463
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGGAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|67702569|gb|BJ962802.1|BJ962802
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|67572938|gb|BJ945762.1|BJ945762
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100445050|gb|BY964349.1|BY964349
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100386534|gb|BY951330.1|BY951330
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208357259|gb|DC910656.1|DC910656
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|208378607|gb|DC903638.1|DC903638
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100447329|gb|CJ971628.1|CJ971628
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGGAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|162155457|gb|FC330953.1|FC330953
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGNNNNNNNTEST: gi|100445979|gb|CJ970278.1|CJ970278
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAG-AAAAAAT
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|162167872|gb|FC344810.1|FC344810
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: CGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100382441|gb|BY969105.1|BY969105
genomic: CGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|162162468|gb|FC339199.1|FC339199
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100386348|gb|BY988015.1|BY988015
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100361517|gb|BY984045.1|BY984045
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100399109|gb|BY954204.1|BY954204
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|162168240|gb|FC344970.1|FC344970
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCEST: gi|100418425|gb|BY957412.1|BY957412
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
EST: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAG GACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
genomic: ATATTCAACGCAGAAGTCGTCTGCTCGAAAACGAGATCCGTGTCTTGAAGgttttttctg ... tggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATC
gggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG
aattatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttctgcgccttgagtatggcgcgcctggttcatggttggatatgtatgttagtctgaggtcttgctgggggggtgtagtagcatggggttgtgtcgaggtgtgaattatcaatgatcggatgggtgggattggatttcagGACGAAACGCACAGACTTTCACTGGAACACGATGCTACGAAAGAAAAAATCAAGGAGAATCAAGAGAAGATCAAGCTGAATAAGCAGCTGCCTTACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC