1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcctctcgctctctctccgacgacattgttgatgtctagggtttatgccgtcgtgactgatactagttgtgtgtgtgtgtgtggtggtggtttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGAACGTCGATGGACGCCAGAAGATCATGTTTGCCTTGACCTCCATTAAGG
species | Physcomitrella patens |
transcript | PP1S215_81V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18330539|gb|BJ162545.1|BJ162545
genomic: GCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATCCTTCGTGTCCTTAACACGEST: gi|162212757|gb|FC388557.1|FC388557
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162243512|gb|FC420632.1|FC420632
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162208358|gb|FC384670.1|FC384670
genomic: GCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|67691839|gb|BJ952072.1|BJ952072
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18336509|gb|BJ168531.1|BJ168531
genomic: GTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|19788983|gb|BQ041032.1|BQ041032
genomic: GCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162261494|gb|FC438330.1|FC438330
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|19785303|gb|BQ040298.1|BQ040298
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18328864|gb|BJ160870.1|BJ160870
genomic: CACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|37824978|gb|BJ583044.1|BJ583044
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18335100|gb|BJ167118.1|BJ167118
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|37844488|gb|BJ602496.1|BJ602496
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: AGCGCCAGCCCCACGGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162263767|gb|FC439647.1|FC439647
genomic: AGCGCCAGCCCCAC-GCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GTCGTCCCTCCTCATCCACCATG TCGTTCATCGCGGGTGAGGAATTTCAGCACATTTTTCGTGTCCTTAACACGEST: gi|67718206|gb|BJ968465.1|BJ968465
genomic: GTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18341523|gb|BJ173558.1|BJ173558
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18350522|gb|BJ182573.1|BJ182573
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18345865|gb|BJ177908.1|BJ177908
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18375221|gb|BJ206799.1|BJ206799
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|67691546|gb|BJ951779.1|BJ951779
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18328270|gb|BJ160274.1|BJ160274
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162263768|gb|FC439648.1|FC439648
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|67726692|gb|BJ976951.1|BJ976951
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|19790285|gb|BQ041800.1|BQ041800
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18337077|gb|BJ169101.1|BJ169101
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162248121|gb|FC420841.1|FC420841
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162261495|gb|FC438331.1|FC438331
genomic: GTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162210621|gb|FC386309.1|FC386309
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|18373983|gb|BJ205561.1|BJ205561
genomic: GCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|7147616|gb|AW509538.1|AW509538
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|19789538|gb|BQ041366.1|BQ041366
genomic: GCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|208387492|gb|DC933355.1|DC933355
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162264394|gb|FC440560.1|FC440560
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162248122|gb|FC420842.1|FC420842
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: GTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|37849277|gb|BJ607285.1|BJ607285
genomic: GTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|19790144|gb|BQ041716.1|BQ041716
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|67508331|gb|BJ941199.1|BJ941199
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|162199889|gb|FC376455.1|FC376455
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGEST: gi|208368935|gb|DC947493.1|DC947493
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
EST: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATG TCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
genomic: CAGCGCCAGCCCCACGCTGTGCTTCTTGTCGTCCCTCCTCATCCACCATGgtgtgtgtgt ... tttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACG
tgccgtcgtgactgatactagttgtgtgtgtgtgtgtggtggtggtttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGAACGTCGATGGACGCCAGAAGATCATGTTTGCCTTGACCTCCATTAAGG
gactgat putative branch site (score: 276)
tttttttc putative PPT
tttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctctcgctctctctccgacgacattgttgatgtctagggtttatgccgtcgtgactgatactagttgtgtgtgtgtgtgtggtggtggtttttttcagTCGCTCATCGCGGGTGAGGAATTTCAGCACATTCTTCGTGTCCTTAACACGAACGTCGATGGACGCCAGAAGATCATGTTTGCCTTGACCTCCATTAAGG
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