1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacagtggtcgaaatcggtgctttttttttttttttttttttttttgttttttttcgcttggtttcagtctaggtccagtttgaatttttgctggctaggaatttgggtgtgtctggacggggttttgatggctgttaggaatggtggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCATCTACGATGTCCGAGCACGACCTAATATCGTTGAGAGCACCTCAGGAA
species | Physcomitrella patens |
transcript | PP1S215_63V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|162219010|gb|FC395203.1|FC395203
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208377915|gb|DC906886.1|DC906886
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|100391953|gb|BY989628.1|BY989628
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208399562|gb|DC908559.1|DC908559
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208370874|gb|DC936222.1|DC936222
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208391371|gb|DC942143.1|DC942143
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208399465|gb|DC908462.1|DC908462
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|18361710|gb|BJ193777.1|BJ193777
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCEST: gi|208358765|gb|DC935179.1|DC935179
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
EST: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAG GTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
genomic: GTGGGCACCGTGCTATTGTATTCAATCGCATTGTTGGAGTCAAGGATAAGgtacagtggt ... tggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTC
aatttgggtgtgtctggacggggttttgatggctgttaggaatggtggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCATCTACGATGTCCGAGCACGACCTAATATCGTTGAGAGCACCTCAGGAA
ttttgat putative branch site (score: 8)
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtggtcgaaatcggtgctttttttttttttttttttttttttgttttttttcgcttggtttcagtctaggtccagtttgaatttttgctggctaggaatttgggtgtgtctggacggggttttgatggctgttaggaatggtggcttgcagGTTTATCCCGAGGGTACGCATTTCATGATTCCCTGGTTCGACAGGCCTGTCATCTACGATGTCCGAGCACGACCTAATATCGTTGAGAGCACCTCAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA