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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcagctggtacactggcttctcctttttatggaagatcttcttgtgtagagagacaactcctctgtgctactctgtcaatccatcaagacgtggaaatcacggtcttttggtgttgggttttgtgatttgttgcgggttttcagttttctttttgttggttgtcgattgtgagtgtgttctggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACCACAATGACGTCCGTGGTGCCTGTGAGTTCCCTTCTCCCCCGCCCGAATT

Basic information

species Physcomitrella patens
transcript PP1S214_66V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100443656|gb|BY963753.1|BY963753
EST:     TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGG                         CCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
genomic: TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGGgtgagtcagc ... ggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
EST: gi|18330360|gb|BJ162366.1|BJ162366
EST:     TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGG                         CCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
genomic: TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGGgtgagtcagc ... ggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
EST: gi|100388966|gb|BY988842.1|BY988842
EST:     TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGG                         CCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
genomic: TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGGgtgagtcagc ... ggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
EST: gi|100448203|gb|CJ972502.1|CJ972502
EST:     TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGG                         CCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
genomic: TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGGgtgagtcagc ... ggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
EST: gi|100377528|gb|BY986287.1|BY986287
EST:     TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGG                         CCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC
genomic: TTCTACGACATTGATATATCGCGGACTATTGGTGTTGCTTTTCCAATTGGgtgagtcagc ... ggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttcagttttctttttgttggttgtcgattgtgagtgtgttctggctttgtagCCTGTGGAATTGTCGGAGGCGTTTGAAGCATTGCTCATGGGTAGTGTGACCACAATGACGTCCGTGGTGCCTGTGAGTTCCCTTCTCCCCCGCCCGAATT
        ttttcttttt  TA-rich tract