1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctcttgagtggtcgtctttgcgccatgtgttttcttttctttcttttattatttgttttccttagattaatatatttttgggagatgtctttgcgttcagGGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGGGGATCCTCCAGCGTGGGTGGACAATGAGGGAATTGGTGCGTCAAAAGAT
species | Physcomitrella patens |
transcript | PP1S213_133V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGGTTGCCACTGTCCGTTTCGGAAGCAATTATTTGGANNNNNNNCGAG GGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGGEST: gi|67572543|gb|BJ945367.1|BJ945367
genomic: TGTGGTTGCCACTGTCCGTTTCGGAAGCAATTATTTGGATTTTTTTCGAGgtggggagtg ... ttgcgttcagGGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGG
EST: TGTGGTTGCCACTGTCCGTTTCGGAAGCAATTATTTGGANNNNNNNCGAG GGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGG
genomic: TGTGGTTGCCACTGTCCGTTTCGGAAGCAATTATTTGGATTTTTTTCGAGgtggggagtg ... ttgcgttcagGGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGG
ttattatttgttttccttagattaatatatttttgggagatgtctttgcgttcagGGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGGGGATCCTCCAGCGTGGGTGGACAATGAGGGAATTGGTGCGTCAAAAGAT
gattaat putative branch site (score: 10)
tgtcttt putative PPT
atttgttttccttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttgagtggtcgtctttgcgccatgtgttttcttttctttcttttattatttgttttccttagattaatatatttttgggagatgtctttgcgttcagGGTTTTTCGGGAAATGAATTCGGAGGAAAATTTCGCTGCTGTGATGGCCGGGGATCCTCCAGCGTGGGTGGACAATGAGGGAATTGGTGCGTCAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA