Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgaattggttgtgtgggaatttcgatttcgtatctttgccatggatgggttggagtggtattgattctagtttgtggtggcgggttttgttaaattttagCACCGAAGGGGCTTTTCCCTCCTGAACCCGAAACCTACAAAGGACCCAAGCTCAAAGTGGCCATCATTGGCGCTGGTCTCGCTGGCATGTCCACTGCCGT

Basic information

species Physcomitrella patens
transcript PP1S211_145V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353084|gb|BJ185139.1|BJ185139
EST:     GCAAGTCTCAGCCAGCTTGCAGAGCTTGGTGTCGGATATGAGCAAGAAAG                         CACCGAAGGGGCTTTTCCCTCCTGAACCCGAAACCTACAAAGGACCCAAGC
genomic: GCAAGTCTCAGCCAGCTTGCAGAGCTTGGTGTCGGATATGAGCAAGAAAGgtgtgcatga ... taaattttagCACCGAAGGGGCTTTTCCCTCCTGAACCCGAAACCTACAAAGGACCCAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggttggagtggtattgattctagtttgtggtggcgggttttgttaaattttagCACCGAAGGGGCTTTTCCCTCCTGAACCCGAAACCTACAAAGGACCCAAGCTCAAAGTGGCCATCATTGGCGCTGGTCTCGCTGGCATGTCCACTGCCGT
             tattgat  putative branch site (score: 3)
                                       ttttgtt  putative PPT
                                       ttttgttaaatttta  TA-rich tract