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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgaaaatgcaaagttgtgggcctttctgccgatgcttgctcactatcgtagttagccagcggtttgtcagtagttgattgttgcggttctgtcgatattttgttttcgtgttggaggattttgcaagtaggttgctacacttctccagataaattaacactaacgaggattgtttctctgaacagAGGGGGCACGGCGTTGGCTGGACCAGGAAGCAAGAGTTTCGGAGATGTCTATCAGTGTAATTGCAGAGTCCCTCATTTCCGAGCCCGCGACAGTGTCGAT

Basic information

species Physcomitrella patens
transcript PP1S20_346V6.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgctacacttctccagataaattaacactaacgaggattgtttctctgaacagAGGGGGCACGGCGTTGGCTGGACCAGGAAGCAAGAGTTTCGGAGATGTCTATCAGTGTAATTGCAGAGTCCCTCATTTCCGAGCCCGCGACAGTGTCGAT
                           cactaac  putative branch site (score: 1)
                                       ttgtttctct  putative PPT
                  ataaattaacactaa  TA-rich tract