1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gatgggcgcttgtagggtttgtagtgcttcagtaggtttttgcttgttttgggtttcgaatcgtatgtctcactattttttctgctgttttgattgccagTTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG
species | Physcomitrella patens |
transcript | PP1S209_115V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTTCCTGCTCCGATTGCCATCATCTCGCACTCTGGAGGGAG TTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTGEST: gi|100400686|gb|BY972935.1|BY972935
genomic: TATTTCCTGCTCCGATTGCCATCATCTCGCACTCTGGAGGGAGgtctctgagc ... tgattgccagTTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTG
EST: TGCTGCATATTTCCTGCTCCGATTGCCATCATCTCGCACTCTGGAGGGAG TTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTG
genomic: TGCTGCATATTTCCTGCTCCGATTGCCATCATCTCGCACTCTGGAGGGAGgtctctgagc ... tgattgccagTTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTG
gttttgggtttcgaatcgtatgtctcactattttttctgctgttttgattgccagTTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG
ttttttctgctgtttt CT-rich tract
actatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgggcgcttgtagggtttgtagtgcttcagtaggtttttgcttgttttgggtttcgaatcgtatgtctcactattttttctgctgttttgattgccagTTGAAAGAGAATATTTTGTCGGCAGAGGCTTTAAAGCGGACTGTTGCATTGTAAGTGACCATGGCGAAGAGTTCTTTCAAGCAAGAGCATCATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - tgcttca