Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttctaagtagccttcttcatgaagagacttgtctgtcacattgctgtgagcaggcattgagttcagagcagctctctcatagtatcttgtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCGATACAACAGATAATTCAGCATTCAGTCTTCCATTTGCTTCCATCTCATC

Basic information

species Physcomitrella patens
transcript PP1S208_169V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67568788|gb|BJ941612.1|BJ941612
EST:     CCCCTCCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTG                         AATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
genomic: CCCCTCCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTGgtactcccta ... gtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
EST: gi|67574172|gb|BJ946996.1|BJ946996
EST:     AGCATCCATGGCGTCTCTCACTG                         AATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
genomic: AGCATCCATGGCGTCTCTCACTGgtactcccta ... gtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
EST: gi|162253082|gb|FC428914.1|FC428914
EST:     CCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTG                         AATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
genomic: CCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTGgtactcccta ... gtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
EST: gi|162251499|gb|FC425567.1|FC425567
EST:     CCTCCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTG                         AATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG
genomic: CCTCCCCCTTCCTCCTCCTCAGCATCCATGGCGTCTCTCACTGgtactcccta ... gtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgagcaggcattgagttcagagcagctctctcatagtatcttgtctgtgcagAATCTATAATGTCTGAACTAGCAGATGGCACCGCATGCTTCGAATTTGTCGATACAACAGATAATTCAGCATTCAGTCTTCCATTTGCTTCCATCTCATC
                                         tcttgtct  CT-rich tract
                                   atagtat  TA-rich tract