Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100375646|gb|BY948932.1|BY948932EST: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAG GTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
genomic: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAGgttggttgtg ... gcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
EST:
gi|18326906|gb|BJ158906.1|BJ158906EST: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAG GTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
genomic: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAGgttggttgtg ... gcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
EST:
gi|100448601|gb|CJ972900.1|CJ972900EST: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAG GTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
genomic: GTAAATACGCGTATAGTAGTGAGTGCCACTTTTTTGTTGCTCTCTATGAGgttggttgtg ... gcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
EST:
gi|18327201|gb|BJ159203.1|BJ159203EST: GTTGTTCTCTATGAG GTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
genomic: GTTGCTCTCTATGAGgttggttgtg ... gcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtgccatttcgccgtctctctgatagtacgtgaaacttgtgtgcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTGCTCGTCGTAAGTATGTTCAAGCCAGGAAGTAAGCAACAACTAAATACAA
ctctgat putative branch site (score: 4)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaggatttcttcagtcgttcgtttagcacgaacctcatgtggttttgtgccatttcgccgtctctctgatagtacgtgaaacttgtgtgcggtgacagGTTGACAAGTGAGAGTGTGGCTGCACATGCCCCGACTATCTGTCAACTGTGCTCGTCGTAAGTATGTTCAAGCCAGGAAGTAAGCAACAACTAAATACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA