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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagacttcggaggccagaaaatactatagaggaacggcgatcttaggagcatttttactgtctttctgctctttgactttgttctgtttatgattatcagGATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCTGTAATAGCCTGCTTAGCGTCAATGGCTCATATTTAAGCGGGAAAATCCA

Basic information

species Physcomitrella patens
transcript PP1S204_138V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100363922|gb|BY966237.1|BY966237
EST:     GGTGGATGCTCAAGGATGGTGTGTCGAATGCGATCGCTTTACTAGGTTTG                         GATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCT
genomic: GGTGGATGCTCAAGGATGGTGTGTCGAATGCGATCGCTTTACTAGGTTTGgtacgaggtg ... tgattatcagGATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCT
EST: gi|100416015|gb|BY957036.1|BY957036
EST:     GGTGGATGCTCAAGGATGGTGTGTCGAATGCGATCGCTTTACTA-----G                         GATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCT
genomic: GGTGGATGCTCAAGGATGGTGTGTCGAATGCGATCGCTTTACTAGGTTTGgtacgaggtg ... tgattatcagGATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagcatttttactgtctttctgctctttgactttgttctgtttatgattatcagGATTTGGAAATTGAAGACGATGCTTTCACGGAGAGAAATTCTTATGCATCTGTAATAGCCTGCTTAGCGTCAATGGCTCATATTTAAGCGGGAAAATCCA
                         ctttgac  putative branch site (score: 4)
                                         tttatgattat  TA-rich tract