1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgaatacaggttttagatcacattggaatgttttgctttttgtgtgggttgtgggtgatgtgaattgggctcgctctgaagatggtgtgatggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCTCTCTTAGTAACTCGATTCATTCGAAGTTGAATCCTAATTCGTCGAAGA
species | Physcomitrella patens |
transcript | PP1S204_121V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGATTCACGCACACCCGACAAGGTGGAGCTGCGCCTGCTTCCGTAATG GCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCEST: gi|162180458|gb|FC355879.1|FC355879
genomic: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATGgtgcgtcctc ... tggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
EST: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATG GCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCEST: gi|208360845|gb|DC934741.1|DC934741
genomic: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATGgtgcgtcctc ... tggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
EST: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATG GCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCEST: gi|162244188|gb|FC423765.1|FC423765
genomic: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATGgtgcgtcctc ... tggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
EST: CGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATG GCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCEST: gi|100388062|gb|BY988535.1|BY988535
genomic: CGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATGgtgcgtcctc ... tggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
EST: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATG GCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
genomic: GAGGATTCACGCACACCCAACAAGGTGGAGCTGCGCCTGCTTCCGTAATGgtgcgtcctc ... tggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatacaggttttagatcacattggaatgttttgctttttgtgtgggttgtgggtgatgtgaattgggctcgctctgaagatggtgtgatggggtgcagGCTTCGGCCGCGTGTATCGCTAGCAAAGTCATTCCCGTGTCGCAAATTTCCTCTCTTAGTAACTCGATTCATTCGAAGTTGAATCCTAATTCGTCGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA