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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gactctgttatctcagagaaaatcaagcactggtcgtttgcttgcggatggaatacgtcttgagattgctcactaatactcttcgtcatatgaaattcagGAGAAGCATCCTTCAGCCTTGAGTACTTTTGAGAAAGTAGCAAAACTTGCTAAAAACAAACAAGTAGTTGTGTTTCTGGATTACGACGGTACTTTGTCAC

Basic information

species Physcomitrella patens
transcript PP1S201_97V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208383331|gb|DC907282.1|DC907282
EST:     AAAATCCTGAAACTATTGACATGGAGGCAGCGGCGTACAGCGCTTGGCTT                         GAGAAGCATCCTTCAGCCTTGAGTACTTTTGAGAAAGTAGCAAAACTTGCT
genomic: AAAATCCTGAAACTATTGACATGGAGGCAGCGGCGTACAGCGCTTGGCTTgtaagcaccg ... tgaaattcagGAGAAGCATCCTTCAGCCTTGAGTACTTTTGAGAAAGTAGCAAAACTTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatggaatacgtcttgagattgctcactaatactcttcgtcatatgaaattcagGAGAAGCATCCTTCAGCCTTGAGTACTTTTGAGAAAGTAGCAAAACTTGCTAAAAACAAACAAGTAGTTGTGTTTCTGGATTACGACGGTACTTTGTCAC
                         cactaat  putative branch site (score: 2)
                                          atatgaaatt  TA-rich tract