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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgtagagaactactcagaaccgtagctcttgtttattgctgaagttttgttagagggattaaggcatttatgattacctttcctcttcgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTCCCAAGAGAGAAACGGACCCAAAGAAGAGGGTTGTAATCACTGGAATGGG

Basic information

species Physcomitrella patens
transcript PP1S201_89V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100372876|gb|BY948744.1|BY948744
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100360671|gb|BY984087.1|BY984087
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|208357649|gb|DC934115.1|DC934115
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100386639|gb|BY970180.1|BY970180
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162160985|gb|FC337009.1|FC337009
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|208348346|gb|DC905546.1|DC905546
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162267461|gb|FC444212.1|FC444212
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100418807|gb|BY975749.1|BY975749
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|208387846|gb|DC941415.1|DC941415
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162190723|gb|FC367609.1|FC367609
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100431839|gb|BY978532.1|BY978532
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162186065|gb|FC361269.1|FC361269
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|67569629|gb|BJ942453.1|BJ942453
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162155172|gb|FC331161.1|FC331161
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|18348947|gb|BJ180996.1|BJ180996
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162160824|gb|FC336723.1|FC336723
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162154190|gb|FC330321.1|FC330321
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162252118|gb|FC428357.1|FC428357
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162182567|gb|FC357542.1|FC357542
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100441455|gb|BY980877.1|BY980877
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162150595|gb|FC326451.1|FC326451
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162220366|gb|FC395734.1|FC395734
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100369482|gb|BY948115.1|BY948115
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162193226|gb|FC372014.1|FC372014
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162163534|gb|FC339444.1|FC339444
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162182299|gb|FC357170.1|FC357170
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162277903|gb|FC453826.1|FC453826
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|67703207|gb|BJ963440.1|BJ963440
EST:     CTCGAAGAGCACGGNCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAAAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|67712522|gb|BJ965971.1|BJ965971
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100447045|gb|CJ971344.1|CJ971344
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162155216|gb|FC331699.1|FC331699
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162277039|gb|FC453761.1|FC453761
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100379105|gb|BY986577.1|BY986577
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162277398|gb|FC453204.1|FC453204
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162184292|gb|FC359701.1|FC359701
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100360911|gb|BY946818.1|BY946818
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|208358490|gb|DC930622.1|DC930622
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGNAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|100396938|gb|BY953903.1|BY953903
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|162241386|gb|FC415444.1|FC415444
EST:     CTCGAAGAGCACGGTCCAAGTGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
EST: gi|18346052|gb|BJ178095.1|BJ178095
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGAT
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGAT
EST: gi|100428697|gb|BY959388.1|BY959388
EST:     CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCAT                         CAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC
genomic: CTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 28 (downstream exon)
Score: 8

GCGATGGCTGCAGCTCCGGCTCTTCCGCAATACCATGGCCTCCGTGCTGCCTCGAAGAGCACGGTCCAAGCGCAACGTCCCTCACAGTTTCCCGCCTCATgtatgtcctt ... cgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTCCCAAGAGAGAAACGGACCCAAAGAAGAGGGTTGTAATCACTGGAATGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgttagagggattaaggcatttatgattacctttcctcttcgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTCCCAAGAGAGAAACGGACCCAAAGAAGAGGGTTGTAATCACTGGAATGGG
                               ttacctttcctcttcg  CT-rich tract
                       atttatgatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctgtagagaactactcagaaccgtagctcttgtttattgctgaagttttgttagagggattaaggcatttatgattacctttcctcttcgttgcacagCAAATGGGAATGTTGGAGCTTCCCGAGTGCGATGTTCGGCTCAGAGCGCTCCCAAGAGAGAAACGGACCCAAAGAAGAGGGTTGTAATCACTGGAATGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - -tgctgaa