1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatctttgctacattagcccttgaatggttagacttttcatgtggactcgtttgtgcagaaattctatcctaatcagaaattggatttgtccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAAACGTGGTGATTACGTCCCCGGATTGAAG
species | Physcomitrella patens |
transcript | PP1S201_84V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATT ATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAEST: gi|208392091|gb|DC941939.1|DC941939
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACA
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGANAACANTCATT ATGGAATGGGTEST: gi|208372750|gb|DC952637.1|DC952637
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGT
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATT ATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAEST: gi|67718033|gb|BJ968292.1|BJ968292
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACA
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATT ATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAEST: gi|208388074|gb|DC933166.1|DC933166
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACA
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACA-TCATT ATGGAATGGGTACAGCAEST: gi|208365046|gb|DC947310.1|DC947310
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCA
EST: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATT ATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAEST: gi|37840758|gb|BJ598766.1|BJ598766
genomic: CTCTGCGCTCTGGGATCTGCCGGTTATCTATGTTTGCGAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACA
EST: GAGANCAATCATT ATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGGGTACTACA
genomic: GAGAACAATCATTgtgagtgtga ... tccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACA
gactcgtttgtgcagaaattctatcctaatcagaaattggatttgtccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAAACGTGGTGATTACGTCCCCGGATTGAAG
tcctaat putative branch site (score: 18)
tttgtcc putative PPT
aaattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctttgctacattagcccttgaatggttagacttttcatgtggactcgtttgtgcagaaattctatcctaatcagaaattggatttgtccgtcgcagATGGAATGGGTACAGCAGAGTGGCGGTCCGCCAAGAGTCCTGAGTACTACAAACGTGGTGATTACGTCCCCGGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -tgctaca