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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgcgaggggttggtggttggggtcctatgatttgggcttgggttgaatgtgggggatctgattcagtgtttgttgttgtcatggtggatggaatgcagTTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTGTTGGTTTGGACAAG

Basic information

species Physcomitrella patens
transcript PP1S200_112V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18351323|gb|BJ183375.1|BJ183375
EST:     GAGTATTCTCGGAGATCGGCAGACAGGCCAAGATGTCCGCACGCAGAATG                         TTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTG
genomic: GAGTATTCTCGGAGATCGGCAGACAGGCCAAGATGTCCGCACGCAGAATGgttgctaact ... tggaatgcagTTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTG
EST: gi|18345169|gb|BJ177210.1|BJ177210
EST:     GAGTATTCTCGGAGATCGGCAGACAGGCCAAGATGTCCGCACGCAGAATG                         TTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTG
genomic: GAGTATTCTCGGAGATCGGCAGACAGGCCAAGATGTCCGCACGCAGAATGgttgctaact ... tggaatgcagTTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatgtgggggatctgattcagtgtttgttgttgtcatggtggatggaatgcagTTATGGCTTGTCAAGCCATTGCCAACATTGTTAAAACCTCATTGGGACCTGTTGGTTTGGACAAG
            atctgat  putative branch site (score: 4)