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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

Basic information

species Physcomitrella patens
transcript PP1S1_66V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
         ||| |    | | | |  || | |||      | || ||  ||| | || ||     ||   ||||| | ||  |  ||          |||||||||||| || || || || |||||||| || ||||| ||||| |||||||| |||||||| || ||  |||||||||| || ||||| || || ||
-------gtaagctcccaatcttccccttcactttc-----tcggggccagatct-gatctgagatgaggttgacaca-cgacgcatg--------caagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgatt---cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
  ||   | |||||  | |       | | ||       || || |   |  |     ||    |      |||   |  |    |||||| | |||   |||||||||| || || || || || ||   ||| || || || |||||   |||||| ||||||||||| ||| |||||||||| || |||||||| || ||
--agaaaaaaagatcgtaaaaagctcgatcaaacgatcgatctgcaagtttctgcattacgaattacgaattgatgga-tgaaatttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
gtagcgtacaagattttca-ccgtgcagtttaattttcttatttggag---cgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
  || | |   |  ||  | || ||  | |      | | |    ||      || |  ||||   | ||  |||   |   |     ||  |  | |   |||||||||| || || || || |||||||||||||| || || ||||| ||||||||||| ||||| |||||| | || ||||| || |||||||| || ||
-gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaatttttggtggtgaatgacatgatctccctctgtgtatgtgtgtggctcg---cagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
-----------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
            | | ||    |||||      | |       |||||   |  |    |    |    ||| |   |    |          | | | | |  ||| ||||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||| | || ||||| || |||||||| || ||
gatttggtccgatcgggtgtgggatttcagaaat-cgacagccttttcccgtcagacaggcaggtcctgactacgctgttctt----------ttgcttgatccgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattc-----agGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
 | |       |  | |||   ||  |    |||     |   || | |   ||| |  |   |  |   ||||| | || ||  ||    ||||| |     |||||||||||| || || || || || ||||| || || || ||||| || ||||||||||||||||| ||| | || ||||| || |||||||| || ||
-tggtccgatcgggtgtcagtctgtcg---gattccagaaagcggtgggctttttcggtcgggc-agttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
--gtagcgtacaagattttcaccg--tgcagtttaattttc---ttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
   |   ||  |||   || | ||   | |  ||||| ||    || |||| || |  |     | ||    ||| | | |       ||  |||   |      ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||||||| | || ||| |||||||||| ||||| || || || ||
cactcatgtgaaagtgattgatcgatcgaatcttaatcttagggttgtttgaagtgataa---aatctgtgaggaatttcat----ttgtatttgaactgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
gta-gcgtaca---agattttcaccgtgcagttta-attttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
 || ||||| |   | |     ||   | | || | |  |||||  || |      |||||    |   | || |       |    |  ||| |   |||  ||| ||||| ||||| ||||| ||||| |||||||| || || ||||| || |||||||||||| | |||||| |||||||||| ||||| || || || ||
ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcatttt---ttctgtagatttatctttaatactaattgatg--gatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgaca--aagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
   |  || ||       |      | | | |  |||||   | |      |||||        |   || | | |  ||  | | |      | ||   ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| || |||||||||||| | || ||| |||||||||| ||||| || || || ||
--tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgcattttctgtagatttatctttaatatgaattgtttgaactgatggaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
---gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
    |  |      ||   | |  |  |  |  ||||||  | || ||   ||   |||||| |      | | ||  |      |  ||  | |||||  ||| ||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||| | || ||| |||||||||| || || || || || ||
aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattt-tgttgat--agGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcag---tttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcg-gtggttg-gttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
  |   | |    | ||||    | ||   | |   || ||| | |  | | |  ||    |  |  ||  ||   | |  | |  |  ||| ||| | |   ||| ||||| ||||| || || ||||| |||||||| |||||||||||||| |||||||||||| |||| |||||||||||||| ||||| || ||||| ||
-aattatgctttttcttcatatcgaaggcatgttgattacttgtgtaaaccatagtt----agattgtgaccttaaagagtgtgtatctttgtgttattaacaagGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 3'ss of exon 1
-gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattc-agGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
  ||| || |     |   |   || | ||||  | |    ||  ||  ||||||  |        | |   ||| |    | |  | | ||||| ||  ||| ||||| ||||| ||||||||||| |||||||| || || ||||| || ||||| |||||| | || |||||||| ||||| ||||| || || || ||
attagtgttcttagatcagaatctggattttaggtattgatttgtgattgtgatt--gggtcgggcgtaaaatgagatgttgttactggattttggttttagGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 3'ss of exon 1
----gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaact-tcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
     |   || ||    |   |   || |   | |||   |  |||  |   | ||    |||  |  || |  ||   |  ||  ||| || | ||     ||| ||||| ||||| |||||||| || |||||||| || || ||||| || ||||| || ||| | || |||||||||||||||||||| || || || ||
gattctcttgtgcattcctcgaattttggaacctcattgggtgctttatatgatcatacgaaaccatgttgaatccttggattgcattggatgttatt-----agGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 1
--gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgat-tcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
    |||   |||           ||    |   | ||    ||||||    ||| | |  |||     ||   ||        |  ||  ||  ||| ||||| ||||| |||||||||||||| || ||||| || || || ||||| ||||||||||||||| | || ||| | || ||||| || ||||| ||||| ||
tctcagcaaccaaaccgaggttaatgtccgtccgtcttgg-gtttggatttggatctagggcttttcaaacgtggatctgatttt--ttatttgggatctcagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGACCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
---------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
           |  ||     |||||| |    ||    || | | |  | ||||     ||   |  |||  |    |||   || |       ||| ||   | ||||||||||||| || ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||| | || |||||||| || || ||||| ||
tccgacgaaacaaagtgttgtattttccc---acatcggaactgtttcctgtggaaacaaatg--gggcttttt----tcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactc--tgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
                                          |    |    | ||   | || | ||     |  ||| ||| ||| |   |    | |||||||||| ||||| ||||| || |||||||| || ||||| ||||| |||||||| || ||| | || ||| | ||||||||||| ||||| || || ||
-----------------------------------------gtaagccagattctttttcctctttgatctaatcgcaatgcgatggatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
------------------------------------------------------------------------------------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgatt-cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
                                                                                         |  | |    ||| || | | |    |||| |||      | |  ||  ||    | ||   | ||   ||      |      ||||  || |||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccc-cattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
------------------------------------------------------------------------------------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
                                                                                         |  | |    ||| || | | |    |||| |||      | |  ||| ||    | ||   | ||        |    |    |||   | |||||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67507548|gb|BJ940430.1|BJ940430
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|37830648|gb|BJ588660.1|BJ588660
EST:     CCGCAGCTGCCNTCGTNTTNTCAT                         GCATGGGCGCTGCATATGGANCAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208344620|gb|DC909179.1|DC909179
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208393998|gb|DC946152.1|DC946152
EST:     ATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: ATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|208378400|gb|DC923043.1|DC923043
EST:     ATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: ATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|37829947|gb|BJ587959.1|BJ587959
EST:     TCGGCTTCATCGGAGCCGCAGCTGCCNTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: TCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|18327933|gb|BJ159937.1|BJ159937
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|22133405|gb|BQ827717.1|BQ827717
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|37845441|gb|BJ603449.1|BJ603449
EST:     GAGCCGCAGCTGCCNTCGTNTTNTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: GAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|100415451|gb|BY992850.1|BY992850
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
EST: gi|162208936|gb|FC385280.1|FC385280
EST:     CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCAT                         GCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA
genomic: CGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 28

ATTCGATCCGGCGCCATGTCGACCTCGGCGGTGTTCAATGGGGATGAGGTCGCTCCTTTCTTCGGCTTCATCGGAGCCGCAGCTGCCCTCGTCTTCTCATgtacgcaatg ... tttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
      attttgaa  TA-rich tract