1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atatgggattgacgttcagcagtgatttttcatgctttgagtccatgtgggacaagtgcagtcgtcgtaacaataatgaggagcttcattgttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAGGGCCAAACTATGGAGATGATCAGCCCTGAGCTTTTAGAAGATTGTGCT
species | Physcomitrella patens |
transcript | PP1S199_23V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|37852535|gb|BJ610543.1|BJ610543
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|18357698|gb|BJ189757.1|BJ189757
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|37837061|gb|BJ595069.1|BJ595069
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|37830821|gb|BJ588833.1|BJ588833
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: ACGAGAACGAGGNCNTTATCAAGTATGNCTTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|18359130|gb|BJ191190.1|BJ191190
genomic: ACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|18351476|gb|BJ183528.1|BJ183528
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|18371814|gb|BJ203416.1|BJ203416
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|18367505|gb|BJ199588.1|BJ199588
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAEST: gi|208346849|gb|DC913088.1|DC913088
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
EST: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTG GTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
genomic: AAGCACGAGAACGAGGACCTTATCAAGTATGGCCTACCGGAGGATATCTGgtgcgttccg ... gttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAA
tgtgggacaagtgcagtcgtcgtaacaataatgaggagcttcattgttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAGGGCCAAACTATGGAGATGATCAGCCCTGAGCTTTTAGAAGATTGTGCT
tcgtaac putative branch site (score: 12)
taacaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgggattgacgttcagcagtgatttttcatgctttgagtccatgtgggacaagtgcagtcgtcgtaacaataatgaggagcttcattgttggcccagGTTCCATGTGGATAAGCTGTCATCTGCTCATGTCTACCTGAGAATGCACAAGGGCCAAACTATGGAGATGATCAGCCCTGAGCTTTTAGAAGATTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT