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...attgacgatttgcagatataccctggatttttgatgcagagcattgtgattatgtgttggtgatgactctgaggcttacgatggttttttcggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATTTTGTGGCGTTGCCGGGATATCGACTCATGAAGCTGCAGCTGAATCTAC
species | Physcomitrella patens |
transcript | PP1S199_22V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATEST: gi|18353878|gb|BJ185933.1|BJ185933
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCACGTCCAATEST: gi|18350048|gb|BJ182099.1|BJ182099
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCACGTCCAATEST: gi|100395236|gb|BY953648.1|BY953648
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATEST: gi|100448323|gb|CJ972622.1|CJ972622
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
EST: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCAT GGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
genomic: ACAGATGGGATTGAGGGCACAACCGCCAGTTCTTAGGCACCTTGCTTCATgtatatctct ... cggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAAT
gtgattatgtgttggtgatgactctgaggcttacgatggttttttcggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATTTTGTGGCGTTGCCGGGATATCGACTCATGAAGCTGCAGCTGAATCTAC
ggcttac putative branch site (score: 6)
ttttttc putative PPT
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgacgatttgcagatataccctggatttttgatgcagagcattgtgattatgtgttggtgatgactctgaggcttacgatggttttttcggactgcagGGCTTCGCAATGGGCAGGTCAGGTGTCAAAAGCCTGCAGGTCATGTCCAATTTTGTGGCGTTGCCGGGATATCGACTCATGAAGCTGCAGCTGAATCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - -tgatgca