1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tagaatgagttttcaacgattaggccggcgtgagaacgagaaaagttgatttcttatttggcattgtgttacctctgaggatttttggatactttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAAAGTGCCCGGGTCTTCTTGAGGCAAAATCATTCTGTGCAAGTGTGTCTTA
species | Physcomitrella patens |
transcript | PP1S199_127V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAG GGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAAEST: gi|18366503|gb|BJ198582.1|BJ198582
genomic: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAGgtttgctgct ... actttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAA
EST: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAG GGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAAEST: gi|100358037|gb|BY965440.1|BY965440
genomic: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAGgtttgctgct ... actttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAA
EST: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAG GGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAAEST: gi|67703547|gb|BJ963780.1|BJ963780
genomic: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAGgtttgctgct ... actttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAA
EST: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAG GGTTTGGCGATGAGGAAGGGTCCGTGTANAGCANTCAAGGAGAGTGTGGAA
genomic: TGTGCCGCTACGGCGTAACGTCCTCTTCACCACCCACTGCCACGCTGCAGgtttgctgct ... actttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAA
ttgatttcttatttggcattgtgttacctctgaggatttttggatactttttcagGGTTTGGCGATGAGGAAGGGTCCGTGTAGAGCAGTCAAGGAGAGTGTGGAAAGTGCCCGGGTCTTCTTGAGGCAAAATCATTCTGTGCAAGTGTGTCTTA
agttgat putative branch site (score: 5)
tactttttc putative PPT
ttcttattt TA-rich tract