ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

...aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

Basic information

species	Physcomitrella patens
transcript	PP1S198_154V6.4
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os12g06660.1 (Oryza sativa), 3'ss of exon 2

----------------------------------------------------aaccttaacttgc-gtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                                    |||   |||   |  |||| |   || ||    |||    ||             ||| |       | |  |  | | || |            || ||||| || ||||| || || ||||| || || || ||||| |||||||||||||| || ||  ||||||| || |||||||| || ||||| ||||||||||
gtcatcatcatcatcaactcaatccaattaaccacctctcacaaatcacaacaacaacaacaaaccataccttatgttcttgcgttcaaaaaattcagtaaacaacaacaacagcaacgata-aaccattgataataataatccaaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTGGGTCGCCCCCGGCACACGGGGGTGATGGTGGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G478779_T02 (Zea mays), 3'ss of exon 7

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
           | |  ||  |  |||      |||| ||   | || |  | |       |   |||||  |  |  || | ||            ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
-----------gtgagccaccggtttg----gtcacatctgttctcggtggctgctggggccc-taacaacagcaccaacctcg------------gcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G152328_T02 (Zea mays), 3'ss of exon 1

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgag----taatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
           |    ||  |  |||      |||| ||   | |   || | ||    ||| |     || || |    |||  ||      |   |  ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
-----------gtaagccaccggtttg----gtcacatctgttcttgagaatgcaaggttctcggtggctgctggggccctaacaacaacaccaacctcggcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G859691_T01 (Zea mays), 3'ss of exon 7

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgag----taatcac-gtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
           |    ||  |  |||      |||| ||   | |   || | ||    ||| |     || || |    |||  || |  |  |  |   ||||||||| |||||||| || ||||||||  | | ||| || || ||||||||||| || ||| | ||||||||||| |||||||| ||||| ||||||||||
-----------gtaagccaccggtttg----gtcacatctgttcttgagaatgcaaggttctcggtggctgctggggccctaacaacagcaccaacctcg-gcagGCTGGGTTCGCTGGCGACGACGCCCCGAGGGTCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGATGGGGCAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G478779_T01 (Zea mays), 3'ss of exon 5

------aaccttaacttgcgtaccctcaatttttatcatcact-----tcatctgtctggagttcacatctcttgtaacatgatgag----taatcac-gtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
        || |    ||||    |  || |   ||  |||        || | || |||      |   ||| |     || || |    |||  || |  |  |  |   ||||||||| |||||||| || ||||||||  | ||||| || || ||||||||||| || ||| | ||||||||||| |||||||| |               
tatccagcccctcgtctgcgacaacggaactggcatggtcaaggtgagccaccggtttggtcacatctgttctcggtggctgctggggccctaacaacagCACCAACCTCG-GCAGGCTGGGTTCGCTGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTGGGGCGCCCGCGCCACACTGGTGTCATGGTCGGGA---------------

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G047055_T01 (Zea mays), 3'ss of exon 2

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                           || |  |  ||  |    ||| | |  |||  | || |  ||  ||     | ||    |  | ||   ||||||||| ||||| || || ||||||||  | ||||| || || |||||||| || || ||| | ||||| ||||||||||| || ||||| |||||||| |
---------------------gtaagctaccgccgatttgttc-cctgaactaaacacttattctt-cagaatcccctaaca-acaccaacttctggcagGCTGGGTTCGCCGGCGACGACGCCCCGAGGGCCGTCTTCCCCAGCATCGTTGGGCGCCCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                |||   |   |  |||   || ||| |  ||    |   ||  |  |  |  |  |  | |  |  |||||||||| ||||| ||||| || ||  | || || || || ||||| || || || ||  | ||||||||||| ||||| || ||||||||||||||||
-------------------------------gtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
   ||        |   |   |||  | |   |||   |   |  |||   || ||| |  ||    |   ||  |  |  |  |  |  | |  |  |||||||||| ||||| ||||| || ||  | || || || || ||||| || || || ||  | ||||||||||| ||||| || ||||||||||||||||
tgtctgcgacaatggcactggaatggtcaaggtcagcccccgtccctgactttgacaacctttacttccaaatatgccactaattatgtctgtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA18G52780.1 (Glycine max), 3'ss of exon 1

----------------------------------------aaccttaacttgcgtaccctcaat--ttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                        || |||| ||  | ||| ||   |  ||||||    |  |||| |  |   | |     | |  || |     |  | ||||  |   |  || || || |||||||||| ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
gtacatgatggatcttttgtttttgtattatttgttgaataaactta-ctgtcatactcttgttggttttatgggaatatcattttacattaatgttacttttgtgaatttgaaaaattaattgca-acaaatatt-tgtagGCTGGTTTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA02G10170.1 (Glycine max), 3'ss of exon 2

-----------------------------------------aaccttaacttg-cgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcg--gattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                         ||  | |  ||| | |||  |  |||  | | ||      |||  | |  | || |  |  ||| |   |   |||  ||| |  |||   || | | || ||||||| || ||||||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| || ||||| || || || |
gtacatgagggatcttttgtttgtgtattaaatttgttgataatgtaactttgacatactttttattggttttatgggaatatcattttaca-ttaatgttacttctgtgaatttgaaaaattaattgcaatgaatctttgtagGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA09G17040.1 (Glycine max), 3'ss of exon 1

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttg-taacatgatgagtaatcacgtgcggatt---ttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
|   ||  |||  |     | |  |  ||  |    || | | ||  ||  | || |        |||   | |||||| |          ||   || |||||||||| || ||||||||||| || ||  | |||||||| || ||||| ||||| || ||  | ||||||||||||||||| || ||||| || ||||| |
agttttgtcttttggtttttga--tgatactagattttgacccgt--gggatacaaagagagaactaattgggtgagtacttcaaattatgttcaattttgcagGCTGGATTTGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA19G00850.1 (Glycine max), 3'ss of exon 1

aaccttaacttgcgtaccctcaattttta-tcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
   |  ||    |      ||  ||  |  |  ||     |  ||| | | ||| || | ||   |  | |  | | |    | |||     | | | ||||| || || || |||||||| ||||| || || |||||||| ||||| || || || ||  | ||||||||||||||||| |||||||| ||||| || |
gtacagaatgcacactttttcgtttgatgcttctcgagggaattgttttgcgttaacttttcccctt-cgttctaattg-caatgtg-----tcttttcagGCAGGATTTGCAGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTTGGTCGTCCTCGTCACACTGGTGTGATGGTTGGTATGGGCCAGAAAGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA02G29160.2 (Glycine max), 3'ss of exon 2

-----aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
     |||   | ||     |   |  |  | ||||   |  |  ||  |  |   || |    | || |     | ||   | |   || |   |||   ||||||||| || ||||||||||| || ||  | || ||||| || ||||| ||||| || ||  | ||||||||||||||||| || ||||| || |||||||
tggagaacaacacctaaaacagaatggaactgtatc--taagttgtcctttggtttttgatgatttttctctttcggtgttgatttgtgttcaatttt---gcagGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGCCACACTGGTGTGATGGTTGGAATGGGGCAAAAGGACG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2

-aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
     |||   ||  ||   | |  |  | | ||   |  | |  |||    |  |||| |   |||| |  |    | || |  |  | || |||  ||||||||||| ||||| ||||| |||||  | || ||||| || || || || || || || |||||||||||||| ||||| |||||||| ||||| || |
gtgagttagactgtttat--ttagatactgt-atggttctaaccttctttgttgtacatgt---gtaagactactgatcatgatttttgtatatta-acagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3

aaccttaacttgcgtacc-ctcaatttttatcatcacttcatctgtctggagttca-catctcttgtaacatgatgagtaatc-acgt-gcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
  |  |   ||   |    ||  || |  |   |   |   | ||| ||  | ||  ||  |  |  |     || ||   || | ||   |  || |||||||||||| || || || ||||| || ||| | || |||||||| || || ||||| ||||| |||||||||||||| ||||| || ||||| || || || |
gtctgttgtttctttcttgcttgatatgcagatttgttgtgt-tgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 3'ss of exon 1

aaccttaacttgcgtaccctcaatttttatcatcactt---catctgtctggagttcacatctcttgtaa-catgatg--agtaatcac-gtg-cggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
              || | |     ||   | |  | |   |  |   ||| ||  |     ||  | || | |||||   |  ||| | ||| ||   | |  ||||||||| || ||||| ||||| ||||| ||||| ||||| ||   ||||||||| |||||  | ||||| |||||||||||||| ||||| ||||||    
--------tccatttaacttgggcgttgggcctggcgtgggccccgcgctgcagcgcgttgttcgagcaaacctgatgctggcgatcgctgtgtcgccgtgtccgcagGCTGGCTTTGCTGGTGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTGGGCCGGCCCCGCCACACCGGTGTGATGGTCGGGATGGGCCAGAAG----

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ17401 (Selaginella moellendorffii), 3'ss of exon 1

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                        |  |      |  |   | ||||||   ||  |||        ||| |   ||  |||||||||| || || ||||| || || ||| | ||||||||||| ||||| ||||| ||||| | |||||| || || ||||| || ||||| |||||||| |
---------------------------------------gtgcgctcctggcgcg-gtttcttgtgg-attttgatccggggggtgtg---ttcttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

upper sequence: PP1S198_154V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ35077 (Selaginella moellendorffii), 3'ss of exon 1

aaccttaacttgcgtaccctcaatttttatcatcacttcatctgtctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG
                                        |  |      |  |  || ||||||   ||  |||        ||| |   ||| |||||||||| || || ||||| || || ||| | ||||||||||| ||||| ||||| ||||| | |||||| || || ||||| || ||||| |||||||| |
---------------------------------------gtgcgctcctggcgcg-atttcttgtgg-attttgatccggggggtgtg---tttttgcagGCTGGATTTGCCGGAGACGATGCTCCCAGGGCCGTGTTTCCCAGCATTGTGGGCCGGCCCAAGCACACGGGCGTCATGGTTGGAATGGGGCAGAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|208357720|gb|DC902286.1|DC902286

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|208347181|gb|DC909409.1|DC909409

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACNCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|100362530|gb|BY947400.1|BY947400

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|100445806|gb|CJ970105.1|CJ970105

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|67716533|gb|BJ966793.1|BJ966793

EST:     TCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAG                         GCTGGTTTCGCTGGAGATGACACCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: TCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|67712858|gb|BJ966307.1|BJ966307

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|67709941|gb|BJ965757.1|BJ965757

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGACAATGGATCCGGAATGGTGAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

EST: gi|100367036|gb|BY948336.1|BY948336

EST:     GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAG                         GCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG
genomic: GTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 57

GCACTGTTTTTGAACTCCTGTAGGATCATTCTAAAAAATGGCGGGGGAAGGTGAGGATGTCCAGCCTTTGGTGTGCGATAATGGATCCGGAATGGTCAAGgtatgcactg ... ttttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ctggagttcacatctcttgtaacatgatgagtaatcacgtgcggattttatgcagGCTGGTTTCGCTGGAGATGACGCCCCCCGCGCCGTGTTTCCGAGCATCGTGGGACGGCCGAGGCACACTGGTGTGATGGTCGGTATGGGACAGAAGGACG