1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgggagttcaattcattcgccgaacgacaggtttttcttttgtgaaactgatcctggggaatttttgtttgtggattgcatactttggtttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
species | Physcomitrella patens |
transcript | PP1S197_12V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAACCTGATATTGAGEST: gi|208399259|gb|DC912460.1|DC912460
genomic: GTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|67717109|gb|BJ967368.1|BJ967368
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCCGATATTGAGEST: gi|162251127|gb|FC426404.1|FC426404
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|67508124|gb|BJ940995.1|BJ940995
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|162251128|gb|FC426405.1|FC426405
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|18352449|gb|BJ184503.1|BJ184503
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|18360281|gb|BJ192343.1|BJ192343
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAACCTGATATTGAGEST: gi|18367956|gb|BJ200040.1|BJ200040
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCTGATATTGAGEST: gi|67725632|gb|BJ975891.1|BJ975891
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: AGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAGCCCGATATTGAGEST: gi|18364782|gb|BJ196855.1|BJ196855
genomic: AGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
EST: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGG GTATGAGGAAGAGCCGCCGGAACCTGATATTGAG
genomic: TGAGTCATGGCTGACGAAGATTATAATGATTACGACGGTGGTGATGTTGGgtatgtgaga ... tttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
gaaactgatcctggggaatttttgtttgtggattgcatactttggtttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
aactgat putative branch site (score: 44)
aatttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgggagttcaattcattcgccgaacgacaggtttttcttttgtgaaactgatcctggggaatttttgtttgtggattgcatactttggtttgttgcagGTATGAGGAAGAGCCGCCGGAGCCTGATATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA