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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctagattagacttgatcctggaagactttaggaggatttgaccagtccaggcacttgagggtgattggcttttgagattaattgcggtgttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAGCTTCGGTGGTAGGACATTGTGCTGGTTGCAATGCAGGCTCTGGGAGTCA

Basic information

species Physcomitrella patens
transcript PP1S196_120V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172355|gb|FC348296.1|FC348296
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
EST: gi|100431995|gb|BY978612.1|BY978612
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
EST: gi|18374314|gb|BJ205892.1|BJ205892
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
EST: gi|100452821|gb|CJ975460.1|CJ975460
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
EST: gi|18361239|gb|BJ193304.1|BJ193304
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
EST: gi|100444172|gb|BY964070.1|BY964070
EST:     TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGG                         AAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG
genomic: TGGTGTTTTCCCTTGCAACTTCACGACGCAATTCGTCGTCCAGGATAGGGgtacggatgt ... gttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtccaggcacttgagggtgattggcttttgagattaattgcggtgttggtgcagAAAAAACTCTGCGAGGTTGGAGTTTGAGGCAGGGCATTTTGGGTGTTGGAGCTTCGGTGGTAGGACATTGTGCTGGTTGCAATGCAGGCTCTGGGAGTCA
                                gattaat  putative branch site (score: 3)
                          ttttgagattaatt  TA-rich tract