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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgattgaattttaatcctcattcttcttctgttgatggaaactgttagtggaaccacatgtcaatcaggaccgcgcttgttaccgcttgcttcgcatgttgaagagggctgggcgaggtcttcaggacttcatggttctgctcacttgctttactgcatggtggatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGCAAGTGAATCCACCATGTGGATTTAGGCACAGAGTTACTGACAGTCTTC

Basic information

species Physcomitrella patens
transcript PP1S193_49V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100420389|gb|BY976000.1|BY976000
EST:     GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG                         GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: gi|100406311|gb|BY955568.1|BY955568
EST:     GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG                         GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: gi|100406553|gb|BY955661.1|BY955661
EST:     GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAG                         GTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG
EST: gi|208359112|gb|DC930444.1|DC930444
EST:     GCCACTGAGGCTCCATCATGAGCTCATCANGGTACGGCCAAAAGGANAAG                         GTTCTGAGTCNAATTGCTGCAAATCGGCTGCANAAAGAACTTACTGAGTGG
genomic: GCCACTGAGGCTCCATCATGAGCTCATCAGGGTACGGCCAAAAGGAGAAGgtgcgattga ... gatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcaggacttcatggttctgctcacttgctttactgcatggtggatatttcagGTTCTGAGTCGAATTGCTGCAAATCGGCTGCAGAAAGAACTTACTGAGTGGCAAGTGAATCCACCATGTGGATTTAGGCACAGAGTTACTGACAGTCTTC
                    tgctcac  putative branch site (score: 2)
                                              atatttca  TA-rich tract