1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgttatgtattatggaaaatgcttatggggcttcctttaggtcctcttagatgatgcgacacccgtgaaactcataacttgctgttgcttatgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACGGGTACAATAAAGGTGATATCGGAAAGCTTTTCATAGCTGGATTTGGATC
species | Physcomitrella patens |
transcript | PP1S18_8V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGG CGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACGEST: gi|67575992|gb|BJ948816.1|BJ948816
genomic: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGGgtaacaaacc ... atgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACG
EST: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGG CGGGAGACTGGCTGCAEST: gi|100356422|gb|BY946357.1|BY946357
genomic: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGGgtaacaaacc ... atgtgtgcagCGGGAGACTGGCTGCA
EST: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGG CGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACGEST: gi|208362207|gb|DC939631.1|DC939631
genomic: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGGgtaacaaacc ... atgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACG
EST: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGG CGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACG
genomic: TTTCAATGCCTTCAAGAACAACTACCTGGTCGTCTACTCGCTTATGATGGgtaacaaacc ... atgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACG
cttagatgatgcgacacccgtgaaactcataacttgctgttgcttatgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACGGGTACAATAAAGGTGATATCGGAAAGCTTTTCATAGCTGGATTTGGATC
tcataac putative branch site (score: 6)
ataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatgtattatggaaaatgcttatggggcttcctttaggtcctcttagatgatgcgacacccgtgaaactcataacttgctgttgcttatgtgtgcagCGGGAGACTGGCTGCAAGGACCATACGTGTACGCCCTATATGTCTTTTACGGGTACAATAAAGGTGATATCGGAAAGCTTTTCATAGCTGGATTTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA